Factsheet for Solyc10g053970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043545	Potato	cytosol	96.79	93.78
Solyc01g109870.2.1	Tomato	cytosol	82.18	81.92
Bra030295.1-P	Field mustard	cytosol	34.99	77.03
CDY15888	Canola	cytosol	34.99	77.03
GSMUA_Achr3P28830_001	Banana	nucleus	32.58	76.6
VIT_03s0038g04470.t01	Wine grape	cytosol	76.24	76.0
CDX99587	Canola	cytosol, mitochondrion	34.51	75.97
KRH29416	Soybean	cytosol	76.24	75.52
KRH24438	Soybean	cytosol	75.6	74.88
AT4G39170.1	Thale cress	cytosol, nucleus, plastid	72.07	73.13
KRH60804	Soybean	cytosol	73.19	73.08
CDX82040	Canola	cytosol	68.86	71.14
CDX90316	Canola	cytosol	70.14	70.71
CDY12125	Canola	cytosol	69.82	70.62
CDY13810	Canola	cytosol	71.43	70.41
Bra010700.1-P	Field mustard	cytosol	69.82	70.39
AT2G21520.3	Thale cress	cytosol	71.59	70.02
KRH51499	Soybean	cytosol	71.59	69.58
Bra031196.1-P	Field mustard	cytosol	70.14	69.15
GSMUA_Achr1P12050_001	Banana	cytosol	69.34	69.01
GSMUA_Achr2P09690_001	Banana	cytosol	69.34	69.01
GSMUA_Achr9P22020_001	Banana	cytosol	67.58	66.72
KXG29407	Sorghum	cytosol, nucleus, plastid	65.65	65.34
TraesCS6A01G097100.2	Wheat	cytosol, nucleus, plastid	64.37	63.65
TraesCS6B01G125600.1	Wheat	cytosol, nucleus, plastid	64.04	63.33
GSMUA_Achr10P...	Banana	cytosol	56.18	62.72
Zm00001d015174_P005	Maize	cytosol	65.33	62.23
Solyc04g080690.1.1	Tomato	cytosol	27.93	61.05
Zm00001d053994_P008	Maize	cytosol, mitochondrion	65.17	60.96
Os02t0133100-01	Rice	cytosol	41.09	60.52
Os05t0545000-01	Rice	cytosol, nucleus, plastid	57.95	58.89
TraesCS6D01G085300.6	Wheat	cytosol, nucleus, plastid	61.32	58.68
Zm00001d038880_P001	Maize	cytosol	57.3	57.77
Zm00001d009439_P004	Maize	cytosol	57.14	57.61
KXG22454	Sorghum	cytosol	57.14	57.51
GSMUA_Achr3P28840_001	Banana	mitochondrion	33.23	56.25
TraesCS1B01G384500.1	Wheat	cytosol, nucleus, plastid	55.22	55.39
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	50.88	55.23
Solyc10g053900.1.1	Tomato	cytosol, plastid	49.92	54.66
HORVU6Hr1G017570.5	Barley	cytosol, nucleus, plastid	64.21	53.69
KXG33199	Sorghum	cytosol	51.36	52.89
Solyc11g040280.1.1	Tomato	cytosol	49.92	52.01
TraesCS3D01G255900.4	Wheat	cytosol	51.04	51.71
GSMUA_Achr1P25320_001	Banana	cytosol	54.25	51.68
Zm00001d011663_P003	Maize	cytosol	50.56	51.3
TraesCS3A01G255000.6	Wheat	cytosol	51.85	50.63
TraesCS3B01G287000.6	Wheat	cytosol	51.52	50.31
Zm00001d043733_P002	Maize	mitochondrion	43.02	48.82
HORVU3Hr1G065830.17	Barley	cytosol, mitochondrion, plastid	52.01	48.43
TraesCS1D01G372200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	54.9	47.9
TraesCS1A01G366700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	54.74	47.89
HORVU1Hr1G078880.9	Barley	cytosol, nucleus	54.9	46.91
Os01t0701900-01	Rice	nucleus	50.4	46.8
Solyc09g060090.2.1	Tomato	cytosol	42.22	44.35
Solyc07g066090.2.1	Tomato	nucleus	42.86	43.06
Solyc10g005740.1.1	Tomato	nucleus	39.65	39.97
Solyc08g078680.2.1	Tomato	cytosol	26.32	34.17
Solyc07g065700.2.1	Tomato	cytosol	8.03	27.17
Solyc11g012790.1.1	Tomato	cytosol	13.64	25.15

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001251
InterPro:IPR036865	UniProt:K4D0Z5	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PANTHER:PTHR23324	PANTHER:PTHR23324:SF145	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
EnsemblPlantsGene:Solyc10g053970.1	EnsemblPlants:Solyc10g053970.1.1	TMHMM:TMhelix	UniParc:UPI000276A88B	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:54293081..54299245

Molecular Weight (calculated)

70461.6 Da

IEP (calculated)

8.562

GRAVY (calculated)

-0.505

Length

623 amino acids

Sequence
(BLAST)

001: MSGPLDRFAM PCFEGSSTHD ERRERKSDFE NSEDERRTRI GTLKKKAINA STKFKHSLKK KGRRKSDGRV SSVSIEDIRD AEELQAVDQF RQALILDDLL
101: PGRHDDYYMM LRFLKARKFD IDKAKHMWAD MLQWRKEFGA DTIIHDFQFQ EQDEVSKYYP QGYHGIDREG RPVYIERLGK VDPTKLMQVT TMDRYIRNHV
201: REFEKTFAIK FPACTVAAKR QIDSSTTILD VQGVGLKNFT KSARELIMRL QKIDGDNYPE TLHQMLIINA GPGFRLLWST VKSFLDPKTT SKIHVLGYKY
301: QTKLLELVDV SELPDFLGGN CTCADQGGCL RSDKGPWQNP EILKMIGEAR RARQVVKVVN SEGKVVYAKP RFPMQSKGSD TSTAESGSEA EDIGSPKAVR
401: NYSHLRLTPV REEAKGIGMS GYTANLSGYD EYVPMVDKAV DSVLKKQTSF HKAPIAKGIL PPADSQKPAG GLNAQILGFL MAFFTTVVML FRSLLCCITK
501: KFPDPSIGQD QAVQEFTFDA NSNEELRPPS PTPAFSEAQL LSVVLKKLGE LEDKVSTLQE KPSEMPYEKE ELLNAAVCRV DALEAELIAT KKALHEALMR
601: QEELLAYIDG QEAAKFQKKK FCF

Best Arabidopsis Sequence Match ( AT2G21520.1 )
(BLAST)

001: MSGPLDRFAR PCFEGFLSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KSGRRKSDGR VSSVSIEDVR DVEELQAVDA FRQSLLMDEL
101: LPDRHDDYHM MLRFLKARKF DVEKAKQMWA DMIQWRKEFG TDTIIQDFDF EEINEVLKHY PQCYHGVDKE GRPIYIERLG KVDPNRLMQV TSMDRYVRYH
201: VKEFERSFMI KFPSCTISAK RHIDSSTTIL DVQGVGLKNF NKSARDLITR LQKIDGDNYP ETLHQMFIIN AGPGFRLLWN TVKSFLDPKT SAKIHVLGYK
301: YLSKLLEVID VNELPEFLGG ACTCADQGGC MLSDKGPWKN PEIVKMVLHG GAHRARQVVK VLNSEGKVIA YAKPSYTWIK GSDTSTAESG SDAEDIGSPK
401: AIKSFSHLRL TPVREEAKIA GETSLAGSFP GYDEYVPMVD KAVDATWKVK PAIQRVASRG ALMSPTVPKD HEGIKARVLV MFMAFLMAVF TFFRTVTKKL
501: PATTTSSPAE TQGNAIELGS NGEGVKEECR PPSPVPDLTE TDLLNCVTKK LTELEGKIGT LQSKPNEMPY EKEELLNAAV CRVDALEAEL IATKKALYEA
601: LMRQEELLAY IDRQEEAQFQ KMKKKKKKHL FCF

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:B3H588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.