Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12125 | Canola | cytosol | 90.23 | 89.94 |
| Bra010700.1-P | Field mustard | cytosol | 90.23 | 89.64 |
| CDX90316 | Canola | cytosol | 90.07 | 89.48 |
| AT2G21520.3 | Thale cress | cytosol | 84.04 | 81.0 |
| GSMUA_Achr3P28830_001 | Banana | nucleus | 33.71 | 78.11 |
| VIT_03s0038g04470.t01 | Wine grape | cytosol | 76.38 | 75.04 |
| KRH29416 | Soybean | cytosol | 76.38 | 74.56 |
| KRH60804 | Soybean | cytosol | 75.41 | 74.2 |
| KRH24438 | Soybean | cytosol | 75.9 | 74.09 |
| Solyc10g053970.1.1 | Tomato | cytosol | 73.13 | 72.07 |
| PGSC0003DMT400001942 | Potato | cytosol | 73.29 | 72.0 |
| Solyc01g109870.2.1 | Tomato | cytosol | 72.96 | 71.68 |
| KRH51499 | Soybean | cytosol | 73.29 | 70.2 |
| PGSC0003DMT400043545 | Potato | cytosol | 73.29 | 69.98 |
| GSMUA_Achr2P09690_001 | Banana | cytosol | 70.03 | 68.69 |
| GSMUA_Achr1P12050_001 | Banana | cytosol | 69.71 | 68.37 |
| GSMUA_Achr9P22020_001 | Banana | cytosol | 67.92 | 66.09 |
| KXG29407 | Sorghum | cytosol, nucleus, plastid | 65.31 | 64.06 |
| TraesCS6A01G097100.2 | Wheat | cytosol, nucleus, plastid | 65.15 | 63.49 |
| TraesCS6B01G125600.1 | Wheat | cytosol, nucleus, plastid | 64.98 | 63.33 |
| GSMUA_Achr10P... | Banana | cytosol | 57.49 | 63.26 |
| Zm00001d015174_P005 | Maize | cytosol | 65.64 | 61.62 |
| Os02t0133100-01 | Rice | cytosol | 41.69 | 60.52 |
| Zm00001d053994_P008 | Maize | cytosol, mitochondrion | 65.31 | 60.21 |
| Os05t0545000-01 | Rice | cytosol, nucleus, plastid | 58.63 | 58.73 |
| TraesCS6D01G085300.6 | Wheat | cytosol, nucleus, plastid | 62.22 | 58.68 |
| Zm00001d038880_P001 | Maize | cytosol | 58.31 | 57.93 |
| KXG22454 | Sorghum | cytosol | 58.14 | 57.67 |
| Zm00001d009439_P004 | Maize | cytosol | 57.65 | 57.28 |
| AT1G19650.1 | Thale cress | cytosol | 56.19 | 56.74 |
| TraesCS1B01G384500.1 | Wheat | cytosol, nucleus, plastid | 56.35 | 55.72 |
| GSMUA_Achr3P28840_001 | Banana | mitochondrion | 32.74 | 54.62 |
| AT2G21540.2 | Thale cress | cytosol, nucleus, vacuole | 48.7 | 54.56 |
| AT4G34580.2 | Thale cress | cytosol | 48.86 | 54.15 |
| KXG33199 | Sorghum | cytosol | 53.26 | 54.05 |
| HORVU6Hr1G017570.5 | Barley | cytosol, nucleus, plastid | 65.47 | 53.96 |
| AT4G36490.1 | Thale cress | plastid | 47.72 | 53.96 |
| AT1G75370.2 | Thale cress | cytosol | 57.98 | 53.29 |
| GSMUA_Achr1P25320_001 | Banana | cytosol | 56.68 | 53.21 |
| AT2G18180.1 | Thale cress | plastid | 47.56 | 52.33 |
| TraesCS3D01G255900.4 | Wheat | cytosol | 52.12 | 52.03 |
| Zm00001d011663_P003 | Maize | cytosol | 51.47 | 51.47 |
| AT4G39180.1 | Thale cress | cytosol | 46.25 | 51.26 |
| TraesCS3B01G287000.6 | Wheat | cytosol | 52.93 | 50.94 |
| TraesCS3A01G255000.6 | Wheat | cytosol | 52.28 | 50.31 |
| AT2G16380.1 | Thale cress | cytosol | 44.46 | 49.91 |
| Zm00001d043733_P002 | Maize | mitochondrion | 43.81 | 49.0 |
| TraesCS1D01G372200.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 56.19 | 48.32 |
| HORVU3Hr1G065830.17 | Barley | cytosol, mitochondrion, plastid | 52.61 | 48.28 |
| TraesCS1A01G366700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 55.86 | 48.17 |
| Os01t0701900-01 | Rice | nucleus | 52.12 | 47.69 |
| HORVU1Hr1G078880.9 | Barley | cytosol, nucleus | 55.86 | 47.05 |
| AT3G24840.3 | Thale cress | cytosol | 40.72 | 43.1 |
| AT1G55690.4 | Thale cress | nucleus | 42.18 | 41.44 |
| AT5G47510.4 | Thale cress | cytosol | 25.41 | 41.38 |
| AT5G56160.1 | Thale cress | cytosol | 35.83 | 38.13 |
| AT1G55840.1 | Thale cress | cytosol | 14.17 | 26.77 |
| AT5G47730.1 | Thale cress | cytosol | 13.52 | 24.34 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:830072 | UniProt:A0A178V0L3 | ProteinID:AEE87031.1 |
| ArrayExpress:AT4G39170 | EnsemblPlantsGene:AT4G39170 | RefSeq:AT4G39170 | TAIR:AT4G39170 | RefSeq:AT4G39170-TAIR-G | EnsemblPlants:AT4G39170.1 |
| TAIR:AT4G39170.1 | EMBL:AY037182 | EMBL:AY133598 | Unigene:At.19181 | ProteinID:CAB43632.1 | ProteinID:CAB80580.1 |
| InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | UniProt:F4JVA6 |
| GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR001251 | InterPro:IPR036865 | RefSeq:NP_568054.1 | ProteinID:OAO99197.1 | PFAM:PF00650 | PFAM:PF03765 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00180 | PFscan:PS50191 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF145 |
| SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | TMHMM:TMhelix | UniParc:UPI0000162BC3 |
| SEG:seg | : | : | : | : | : |
Description
SFH6Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 [Source:UniProtKB/Swiss-Prot;Acc:F4JVA6]
Coordinates
chr4:+:18240628..18243795
Molecular Weight (calculated)
69606.8 Da
IEP (calculated)
8.758
GRAVY (calculated)
-0.458
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPVDRFAI PCFEGILSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KRRKSDVRVS SVSIEDVRDV EELQAVDEFR QALVMEELLP
101: HKHDDYHMML RFLKARKFDI EKAKHMWADM IQWRKEFGTD TIIQDFQFEE IDEVLKYYPH GYHSVDKEGR PVYIERLGKV DPNKLMQVTT LDRYIRYHVK
201: EFERSFMLKF PACTIAAKKY IDSSTTILDV QGVGLKNFTK SARELITRLQ KIDGDNYPET LHQMFIINAG PGFRLLWSTV KSFLDPKTTS KIHVLGCKYQ
301: SKLLEIIDSS ELPEFLGGAC TCADQGGCML SDKGPWKNPE IVKMVLHGGA HRAKQVVKVL NSDGKVIAYA KPSYPWIKGS DTSTAESGSE AEDIVVSPKA
401: VKSYSHLRLT PVREEAKVGS GETSFAGSFA GYDEYVPMVD KAVDATWKVK PTAINRAPSK GAHMPPNVPK DHESFSARVL VTFMAFVMAI LTFFRTVSNR
501: VVTKQLPPPP SQPQIEGSAA AEEADLLNSV LKKLTELEEK IGALQSKPSE MPYEKEELLN AAVCRVDALE AELIATKKAL YEALMRQEEL LAYIDRQEAA
601: QHQKKNKRKQ MFCF
101: HKHDDYHMML RFLKARKFDI EKAKHMWADM IQWRKEFGTD TIIQDFQFEE IDEVLKYYPH GYHSVDKEGR PVYIERLGKV DPNKLMQVTT LDRYIRYHVK
201: EFERSFMLKF PACTIAAKKY IDSSTTILDV QGVGLKNFTK SARELITRLQ KIDGDNYPET LHQMFIINAG PGFRLLWSTV KSFLDPKTTS KIHVLGCKYQ
301: SKLLEIIDSS ELPEFLGGAC TCADQGGCML SDKGPWKNPE IVKMVLHGGA HRAKQVVKVL NSDGKVIAYA KPSYPWIKGS DTSTAESGSE AEDIVVSPKA
401: VKSYSHLRLT PVREEAKVGS GETSFAGSFA GYDEYVPMVD KAVDATWKVK PTAINRAPSK GAHMPPNVPK DHESFSARVL VTFMAFVMAI LTFFRTVSNR
501: VVTKQLPPPP SQPQIEGSAA AEEADLLNSV LKKLTELEEK IGALQSKPSE MPYEKEELLN AAVCRVDALE AELIATKKAL YEALMRQEEL LAYIDRQEAA
601: QHQKKNKRKQ MFCF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.