Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010700.1-P | Field mustard | cytosol | 98.54 | 98.22 |
| CDX90316 | Canola | cytosol | 98.05 | 97.73 |
| AT4G39170.1 | Thale cress | cytosol, nucleus, plastid | 89.94 | 90.23 |
| CDY15888 | Canola | cytosol | 38.15 | 83.04 |
| CDX82040 | Canola | cytosol | 80.68 | 82.42 |
| CDX99587 | Canola | cytosol, mitochondrion | 37.34 | 81.27 |
| CDY13810 | Canola | cytosol | 82.63 | 80.54 |
| GSMUA_Achr3P28830_001 | Banana | nucleus | 33.44 | 77.74 |
| VIT_03s0038g04470.t01 | Wine grape | cytosol | 73.86 | 72.8 |
| KRH60804 | Soybean | cytosol | 73.54 | 72.6 |
| KRH29416 | Soybean | cytosol | 73.7 | 72.18 |
| KRH24438 | Soybean | cytosol | 73.05 | 71.54 |
| Solyc01g109870.2.1 | Tomato | cytosol | 71.59 | 70.56 |
| PGSC0003DMT400001942 | Potato | cytosol | 71.43 | 70.4 |
| Solyc10g053970.1.1 | Tomato | cytosol | 70.62 | 69.82 |
| KRH51499 | Soybean | cytosol | 71.43 | 68.64 |
| PGSC0003DMT400043545 | Potato | cytosol | 70.94 | 67.96 |
| GSMUA_Achr2P09690_001 | Banana | cytosol | 68.83 | 67.73 |
| GSMUA_Achr1P12050_001 | Banana | cytosol | 68.34 | 67.25 |
| GSMUA_Achr9P22020_001 | Banana | cytosol | 66.88 | 65.29 |
| KXG29407 | Sorghum | cytosol, nucleus, plastid | 64.61 | 63.58 |
| TraesCS6A01G097100.2 | Wheat | cytosol, nucleus, plastid | 64.45 | 63.02 |
| TraesCS6B01G125600.1 | Wheat | cytosol, nucleus, plastid | 63.96 | 62.54 |
| GSMUA_Achr10P... | Banana | cytosol | 56.17 | 62.01 |
| Zm00001d015174_P005 | Maize | cytosol | 65.26 | 61.47 |
| Os02t0133100-01 | Rice | cytosol | 41.72 | 60.76 |
| CDY39363 | Canola | cytosol | 57.63 | 59.97 |
| Zm00001d053994_P008 | Maize | cytosol, mitochondrion | 64.77 | 59.91 |
| Os05t0545000-01 | Rice | cytosol, nucleus, plastid | 58.28 | 58.56 |
| CDY29415 | Canola | nucleus | 57.95 | 58.05 |
| TraesCS6D01G085300.6 | Wheat | cytosol, nucleus, plastid | 61.2 | 57.91 |
| CDX85889 | Canola | cytosol | 56.98 | 57.83 |
| Zm00001d038880_P001 | Maize | cytosol | 57.95 | 57.77 |
| CDX68133 | Canola | cytosol | 56.98 | 57.73 |
| KXG22454 | Sorghum | cytosol | 57.63 | 57.35 |
| Zm00001d009439_P004 | Maize | cytosol | 57.47 | 57.28 |
| TraesCS1B01G384500.1 | Wheat | cytosol, nucleus, plastid | 56.49 | 56.04 |
| CDX75444 | Canola | cytosol | 47.89 | 55.24 |
| CDX99586 | Canola | cytosol | 49.19 | 55.09 |
| CDY15887 | Canola | cytosol | 49.03 | 55.01 |
| CDX69071 | Canola | cytosol | 47.56 | 54.87 |
| GSMUA_Achr3P28840_001 | Banana | mitochondrion | 32.63 | 54.62 |
| HORVU6Hr1G017570.5 | Barley | cytosol, nucleus, plastid | 64.45 | 53.29 |
| KXG33199 | Sorghum | cytosol | 52.27 | 53.22 |
| CDY45318 | Canola | cytosol, plastid | 42.69 | 52.6 |
| CDY17469 | Canola | cytosol | 48.54 | 52.36 |
| CDY12126 | Canola | cytosol | 45.13 | 51.96 |
| CDX90317 | Canola | cytosol | 45.29 | 51.96 |
| GSMUA_Achr1P25320_001 | Banana | cytosol | 55.03 | 51.83 |
| CDX89709 | Canola | cytosol, mitochondrion | 37.82 | 51.21 |
| Zm00001d011663_P003 | Maize | cytosol | 50.97 | 51.14 |
| CDX76291 | Canola | cytosol | 48.54 | 50.51 |
| TraesCS3D01G255900.4 | Wheat | cytosol | 50.16 | 50.24 |
| TraesCS3B01G287000.6 | Wheat | cytosol | 51.14 | 49.37 |
| TraesCS3A01G255000.6 | Wheat | cytosol | 50.65 | 48.9 |
| TraesCS1D01G372200.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 56.17 | 48.46 |
| Zm00001d043733_P002 | Maize | mitochondrion | 43.18 | 48.45 |
| TraesCS1A01G366700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 55.84 | 48.31 |
| Os01t0701900-01 | Rice | nucleus | 52.11 | 47.84 |
| HORVU1Hr1G078880.9 | Barley | cytosol, nucleus | 55.68 | 47.05 |
| HORVU3Hr1G065830.17 | Barley | cytosol, mitochondrion, plastid | 50.81 | 46.79 |
| CDY11954 | Canola | cytosol | 14.29 | 45.13 |
| CDY11957 | Canola | cytosol | 31.82 | 44.04 |
| CDX69225 | Canola | mitochondrion | 43.34 | 43.99 |
| CDY42378 | Canola | nucleus | 42.69 | 40.9 |
| CDY10540 | Canola | cytosol, nucleus, plastid | 42.37 | 40.59 |
| CDY52084 | Canola | cytosol | 38.64 | 40.55 |
| CDY50018 | Canola | vacuole | 40.42 | 38.97 |
| CDX77382 | Canola | cytosol | 39.12 | 38.93 |
| CDY17730 | Canola | cytosol | 25.0 | 38.31 |
| CDX77773 | Canola | cytosol | 24.84 | 37.59 |
| CDY51966 | Canola | cytosol | 35.88 | 37.14 |
| CDY17397 | Canola | cytosol | 35.55 | 36.81 |
| CDY51073 | Canola | mitochondrion, nucleus | 29.87 | 36.01 |
| CDY36780 | Canola | plastid | 32.95 | 35.61 |
| CDY53762 | Canola | cytosol | 14.45 | 27.22 |
| CDY52903 | Canola | cytosol | 14.45 | 27.22 |
| CDY42389 | Canola | cytosol | 13.96 | 26.46 |
| CDY10527 | Canola | cytosol | 13.8 | 26.15 |
| CDY40544 | Canola | cytosol | 13.96 | 26.06 |
| CDY28908 | Canola | cytosol | 13.96 | 25.98 |
| CDY41066 | Canola | cytosol | 13.31 | 24.62 |
| CDY25949 | Canola | cytosol | 13.15 | 24.32 |
| CDX77792 | Canola | cytosol | 13.15 | 24.25 |
| CDY17710 | Canola | cytosol | 12.82 | 23.65 |
| CDY02262 | Canola | cytosol, plastid | 43.99 | 18.81 |
| CDY36781 | Canola | extracellular | 0.16 | 0.6 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | GO:A0A078FCN0 | UniProt:A0A078FCN0 | EnsemblPlants:CDY12125 |
| ProteinID:CDY12125 | ProteinID:CDY12125.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00061116001 | InterPro:IPR001251 |
| InterPro:IPR036865 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 | PFscan:PS50191 | PANTHER:PTHR23324 |
| PANTHER:PTHR23324:SF145 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | TMHMM:TMhelix |
| UniParc:UPI0004EDEA25 | SEG:seg | : | : | : | : |
Description
BnaC03g60410DBnaC03g60410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCN0]
Coordinates
chrLK032017:+:724659..727875
Molecular Weight (calculated)
70104.5 Da
IEP (calculated)
8.875
GRAVY (calculated)
-0.467
Length
616 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPVDRFAI PCFEGLLSSD EKKERKSDFE ISEDERRTRI GSLKKKAINA STKFKHSLKK KKRRKNEGRV SSVSIEDVRD VEELQAVDEF RQSLVMDELL
101: PSKHDDYHMM LRFLKARKFD VEKAKQMWGD MIQWRKEFGT DTIIQDFEFE EIDDVLKYYP QCYHSVDKEG RPVYIERLGK VDPNKLMQVT TIDRYLRYHV
201: KEFERSFMIK FPACTIAAKK HIDSSTTILD VQGVGLKNFS KYARELVTRL QKIDGDNYPE TLHQMFIINA GTGFRVIWST LKSFLDPKTT SKIHMLGNKY
301: QSKLLEVIDS SELPEFLGGT CTCADQGGCM LSDKGPWKNP DILKMVLHGG AHRAKQVVKV LNSEGKVIAY AKPSYPWIKG SDTSTAESGS EAEDVVVSPK
401: AIKNYSHLRL TPVREEAKIG SGETSFAGSL AGYDEYVPMV DKAVDATWKV KPTTTINRVQ SKGVLVTPNV PKENESFSAR VLVFFMAIVM AILAFFRTVS
501: NRVVTKQLPP PPPQIEGNAA AREEEAELLN SVLKKLTELE EKIGALQSKP NEMPYEKEEL LNAAVCRVDA LEAELIATKK ALYEALMRQE ELLAYIDRQE
601: FAQSQKKKKR KHMFCF
101: PSKHDDYHMM LRFLKARKFD VEKAKQMWGD MIQWRKEFGT DTIIQDFEFE EIDDVLKYYP QCYHSVDKEG RPVYIERLGK VDPNKLMQVT TIDRYLRYHV
201: KEFERSFMIK FPACTIAAKK HIDSSTTILD VQGVGLKNFS KYARELVTRL QKIDGDNYPE TLHQMFIINA GTGFRVIWST LKSFLDPKTT SKIHMLGNKY
301: QSKLLEVIDS SELPEFLGGT CTCADQGGCM LSDKGPWKNP DILKMVLHGG AHRAKQVVKV LNSEGKVIAY AKPSYPWIKG SDTSTAESGS EAEDVVVSPK
401: AIKNYSHLRL TPVREEAKIG SGETSFAGSL AGYDEYVPMV DKAVDATWKV KPTTTINRVQ SKGVLVTPNV PKENESFSAR VLVFFMAIVM AILAFFRTVS
501: NRVVTKQLPP PPPQIEGNAA AREEEAELLN SVLKKLTELE EKIGALQSKP NEMPYEKEEL LNAAVCRVDA LEAELIATKK ALYEALMRQE ELLAYIDRQE
601: FAQSQKKKKR KHMFCF
001: MSGPVDRFAI PCFEGILSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KRRKSDVRVS SVSIEDVRDV EELQAVDEFR QALVMEELLP
101: HKHDDYHMML RFLKARKFDI EKAKHMWADM IQWRKEFGTD TIIQDFQFEE IDEVLKYYPH GYHSVDKEGR PVYIERLGKV DPNKLMQVTT LDRYIRYHVK
201: EFERSFMLKF PACTIAAKKY IDSSTTILDV QGVGLKNFTK SARELITRLQ KIDGDNYPET LHQMFIINAG PGFRLLWSTV KSFLDPKTTS KIHVLGCKYQ
301: SKLLEIIDSS ELPEFLGGAC TCADQGGCML SDKGPWKNPE IVKMVLHGGA HRAKQVVKVL NSDGKVIAYA KPSYPWIKGS DTSTAESGSE AEDIVVSPKA
401: VKSYSHLRLT PVREEAKVGS GETSFAGSFA GYDEYVPMVD KAVDATWKVK PTAINRAPSK GAHMPPNVPK DHESFSARVL VTFMAFVMAI LTFFRTVSNR
501: VVTKQLPPPP SQPQIEGSAA AEEADLLNSV LKKLTELEEK IGALQSKPSE MPYEKEELLN AAVCRVDALE AELIATKKAL YEALMRQEEL LAYIDRQEAA
601: QHQKKNKRKQ MFCF
101: HKHDDYHMML RFLKARKFDI EKAKHMWADM IQWRKEFGTD TIIQDFQFEE IDEVLKYYPH GYHSVDKEGR PVYIERLGKV DPNKLMQVTT LDRYIRYHVK
201: EFERSFMLKF PACTIAAKKY IDSSTTILDV QGVGLKNFTK SARELITRLQ KIDGDNYPET LHQMFIINAG PGFRLLWSTV KSFLDPKTTS KIHVLGCKYQ
301: SKLLEIIDSS ELPEFLGGAC TCADQGGCML SDKGPWKNPE IVKMVLHGGA HRAKQVVKVL NSDGKVIAYA KPSYPWIKGS DTSTAESGSE AEDIVVSPKA
401: VKSYSHLRLT PVREEAKVGS GETSFAGSFA GYDEYVPMVD KAVDATWKVK PTAINRAPSK GAHMPPNVPK DHESFSARVL VTFMAFVMAI LTFFRTVSNR
501: VVTKQLPPPP SQPQIEGSAA AEEADLLNSV LKKLTELEEK IGALQSKPSE MPYEKEELLN AAVCRVDALE AELIATKKAL YEALMRQEEL LAYIDRQEAA
601: QHQKKNKRKQ MFCF
Arabidopsis Description
SFH6Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 [Source:UniProtKB/Swiss-Prot;Acc:F4JVA6]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.