CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013077.1-P	Field mustard	cytosol, plastid	99.65	98.42
CDX89709	Canola	cytosol, mitochondrion	30.53	96.7
AT2G16380.1	Thale cress	cytosol	29.35	77.33
CDX69071	Canola	cytosol	26.3	70.97
CDX75444	Canola	cytosol	26.3	70.97
CDY17469	Canola	cytosol	27.06	68.3
CDY45318	Canola	cytosol, plastid	23.46	67.6
CDX76291	Canola	cytosol	27.06	65.88
CDY15888	Canola	cytosol	12.07	61.48
CDX99587	Canola	cytosol, mitochondrion	11.94	60.78
CDY15887	Canola	cytosol	21.65	56.83
CDX99586	Canola	cytosol	21.65	56.73
CDY12126	Canola	cytosol	20.54	55.33
CDX90317	Canola	cytosol	20.4	54.75
KRH24439	Soybean	plastid	12.42	54.57
KRH51503	Soybean	cytosol	20.4	51.31
PGSC0003DMT400043532	Potato	cytosol	19.71	50.99
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	20.19	50.7
KRH29420	Soybean	cytosol, nucleus, plastid	19.71	50.44
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	20.06	50.35
Solyc10g053900.1.1	Tomato	cytosol, plastid	19.85	50.26
KRH60806	Soybean	cytosol	19.92	50.17
PGSC0003DMT400021690	Potato	nucleus	20.68	49.34
Solyc11g040280.1.1	Tomato	cytosol	20.26	48.83
Os02t0440900-00	Rice	cytosol	19.99	48.16
TraesCS2D01G335700.2	Wheat	nucleus	19.71	48.05
TraesCS2A01G327200.2	Wheat	nucleus	19.64	47.88
GSMUA_Achr6P03210_001	Banana	cytosol	19.71	47.81
TraesCS2B01G354800.2	Wheat	nucleus	19.57	47.72
Os10t0122600-01	Rice	cytosol, nucleus, plastid	19.71	47.49
OQU84321	Sorghum	cytosol	18.53	47.34
HORVU2Hr1G082530.1	Barley	cytosol	19.01	47.32
GSMUA_Achr5P23630_001	Banana	cytosol	19.57	46.84
OQU85018	Sorghum	nucleus	19.85	46.66
Zm00001d016601_P006	Maize	cytosol	19.57	46.61
CDY11954	Canola	cytosol	6.11	45.13
CDY12125	Canola	cytosol	18.81	43.99
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	20.12	43.94
CDY39363	Canola	cytosol	18.04	43.92
CDX90316	Canola	cytosol	18.81	43.85
TraesCS6A01G097200.1	Wheat	plastid	18.6	43.72
Os02t0133200-01	Rice	plasma membrane	19.15	43.67
Zm00001d015175_P002	Maize	plastid	19.36	43.26
CDX82040	Canola	cytosol	18.04	43.12
TraesCS6B01G125700.1	Wheat	plastid	18.39	43.09
TraesCS6D01G085200.1	Wheat	plastid	18.32	42.93
HORVU6Hr1G017580.5	Barley	plastid	18.67	42.83
CDY29415	Canola	nucleus	18.04	42.28
CDX68133	Canola	cytosol	17.63	41.78
CDY13810	Canola	cytosol	18.18	41.46
CDX85889	Canola	cytosol	17.42	41.35
CDX69225	Canola	mitochondrion	17.42	41.35
CDY11957	Canola	cytosol	12.42	40.22
CDY17730	Canola	cytosol	10.83	38.81
CDX77773	Canola	cytosol	10.69	37.84
CDY52084	Canola	cytosol	14.71	36.12
CDX77382	Canola	cytosol	14.78	34.41
CDY50018	Canola	vacuole	14.99	33.8
CDY51966	Canola	cytosol	13.95	33.78
CDY17397	Canola	cytosol	13.81	33.45
CDY42378	Canola	nucleus	14.71	32.97
CDY10540	Canola	cytosol, nucleus, plastid	14.57	32.66
CDY36780	Canola	plastid	12.84	32.46
CDY51073	Canola	mitochondrion, nucleus	11.24	31.7
CDY53762	Canola	cytosol	5.55	24.46
CDY42389	Canola	cytosol	5.48	24.31
CDY28908	Canola	cytosol	5.55	24.17
CDY52903	Canola	cytosol	5.48	24.16
CDY40544	Canola	cytosol	5.48	23.94
CDY10527	Canola	cytosol	5.34	23.69
CDY25949	Canola	cytosol	5.41	23.42
CDY41066	Canola	cytosol	5.41	23.42
CDX77792	Canola	cytosol	5.41	23.35
CDY17710	Canola	cytosol	5.27	22.75
CDY36781	Canola	extracellular	0.62	5.36

Protein Annotations

Gene3D:1.10.8.20	MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	Gene3D:3.40.525.10
GO:A0A078EM80	EnsemblPlants:CDY02262	ProteinID:CDY02262	ProteinID:CDY02262.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00113688001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001251	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR036865	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF807	SMART:SM00487	SMART:SM00490	SMART:SM00516	SMART:SM01100	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF46938	SUPFAM:SSF52087	SUPFAM:SSF52540	UniParc:UPI0004EE8959	SEG:seg

Description

BnaA03g39050D

Coordinates

chrLK031932:-:1025471..1034478

Molecular Weight (calculated)

162615.0 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.391

Length

1441 amino acids

Sequence
(BLAST)

0001: MGGLDIETSE DERKIVKISS FRKKAISASN RFKKSFRRKS RRTSSRIVSE PGGINAEDLR SIDAFRQLLL QDDLLPTQHD DPHMMLRFLR ARKLDTEKAK
0101: QMWSDMLQWR KDFGADTIIE DFEFEEIDEV VKHYPQGYHG VDKEGRPVYI ERLGQIDANK LLQVTTMDRY ERYHVKEFEK MFNIKFPSCS AAAKKHIDQS
0201: TTIFDVQGVG LKNFNKCARE LLQRLLKIDN ENYPETLNRM FIINAGPGFR LLWGPVKSFL DPKTTSKIHV LGNKYQSKLL EAIDASELPH FFGGRCTCEG
0301: KGGCMRSDKG PWNDPEILKM VKNPEAKFST ISEDERILVE DEISMVFEPL ERKKKRTIKV NVCEKHIATV DKFMALSLPE KPPKTVKRGN GLPKKDDGFL
0401: VGGVIAFVMG ILAMVRLSKH VPRKLTEAAL FGNSVYNEES KMTNPDQDQL STPVSSSEYV LMAKRMSDLE EKYMSLDSKP ADDGLEKEDK LQAALNRVQV
0501: LEHELSETKK ALDETIAKQN GILEFIEKKK KKKRLATGKK VQSGLLVASL ILLMEILQPT SNGHRKRKPD DALSLASEAK RLRNSSKVTD FSHPFAVTNM
0601: LEALDSGKFG SVTKELEEVA NLRMELVKRC VWLYPSLAHT VFGAGDGQEE LVSLENQLAL DSVIDLDGGD GTEKALCVVP STEIVILDSD EDEDEGVESE
0701: KPKYPFQSSL VQHQKSQGDV QLVTPQFAFE EVVLGKGKEM SCAITALVEG QSSREKVLAI ENGVVNDKGV YVGVEEDESG DESEAADEDL GNIWSEMAMS
0801: IVCSKDVDNS RNESKTDEVE DCEHSFILKD DMGYVCRVCG VIDKSILDII DVNFSKAKRS TRTYASEVRM KKFGESDFEI KLSEEGLMIG GLSAHPTHAN
0901: KMKPHQIEGF QFLCSNLVAD EPGGCIMAHA PGSGKTFMII SFMQSFLAKY PQAKPLVVLP KGILSTWKRE FVRWQVEDIP LLDFYSAKAE NRAQQLGILK
1001: QWMEKKSILF LGYKQFSTIV CDDTSTDSRS CQEILLKVPS ILILDEGHTP RNEDTNVLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT
1101: SKSIVKRILS RAPISDVRSH LGGSSDVSAA FNEIVEHTLQ KCQDFKMKIN MIQDLREMTK KVLHYYKGDF LDELPGLDDF TVVLNLSPRQ LTEVKKLRRE
1201: KRKFKVSAVG SAIYLHPKLN AFSEKTDNVS DTTMDEMLEK LDVNEGVKAK FFLNLIDLCD SAGEKLLVFS QYLVPLKFLE RLAALAKGWK LGKEVFVLTG
1301: ESSSEQRELS MERFNNSPDA KVFFGSIRAC GEGISLVGAS RILILDVPLN PSVTRQAIGR AFRPGQTKKV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF
1401: EWNEYCGFRN FEVETIDVDD AGDMFLESPA LREDIRVLYK R

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.