Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90317 | Canola | cytosol | 96.45 | 96.09 |
| AT4G39180.1 | Thale cress | cytosol | 85.05 | 82.13 |
| CDY15887 | Canola | cytosol | 73.27 | 71.4 |
| CDX99586 | Canola | cytosol | 72.9 | 70.91 |
| KRH24439 | Soybean | plastid | 38.88 | 63.41 |
| CDY15888 | Canola | cytosol | 32.15 | 60.78 |
| CDX99587 | Canola | cytosol, mitochondrion | 31.59 | 59.72 |
| CDX75444 | Canola | cytosol | 58.32 | 58.43 |
| CDX69071 | Canola | cytosol | 58.13 | 58.24 |
| KRH51503 | Soybean | cytosol | 61.5 | 57.42 |
| KRH60806 | Soybean | cytosol | 61.12 | 57.17 |
| CDX89709 | Canola | cytosol, mitochondrion | 48.6 | 57.14 |
| KRH29420 | Soybean | cytosol, nucleus, plastid | 59.63 | 56.66 |
| CDY45318 | Canola | cytosol, plastid | 51.59 | 55.2 |
| CDY17469 | Canola | cytosol | 58.88 | 55.17 |
| PGSC0003DMT400001903 | Potato | cytosol, nucleus, plastid | 58.32 | 54.36 |
| PGSC0003DMT400043532 | Potato | cytosol | 56.26 | 54.04 |
| Solyc01g109860.2.1 | Tomato | cytosol, nucleus, plastid | 57.94 | 54.01 |
| CDX76291 | Canola | cytosol | 58.88 | 53.21 |
| Solyc10g053900.1.1 | Tomato | cytosol, plastid | 56.26 | 52.9 |
| GSMUA_Achr6P03210_001 | Banana | cytosol | 56.45 | 50.84 |
| GSMUA_Achr5P23630_001 | Banana | cytosol | 56.45 | 50.17 |
| TraesCS2B01G354800.2 | Wheat | nucleus | 55.33 | 50.08 |
| TraesCS2D01G335700.2 | Wheat | nucleus | 55.33 | 50.08 |
| Os02t0440900-00 | Rice | cytosol | 55.89 | 50.0 |
| TraesCS2A01G327200.2 | Wheat | nucleus | 55.14 | 49.92 |
| HORVU2Hr1G082530.1 | Barley | cytosol | 53.83 | 49.74 |
| PGSC0003DMT400021690 | Potato | nucleus | 55.89 | 49.5 |
| Solyc11g040280.1.1 | Tomato | cytosol | 55.33 | 49.5 |
| Os10t0122600-01 | Rice | cytosol, nucleus, plastid | 55.33 | 49.5 |
| CDY11954 | Canola | cytosol | 17.76 | 48.72 |
| OQU84321 | Sorghum | cytosol | 50.84 | 48.23 |
| OQU85018 | Sorghum | nucleus | 54.95 | 47.96 |
| Zm00001d016601_P006 | Maize | cytosol | 54.02 | 47.77 |
| GSMUA_Achr2P14280_001 | Banana | cytosol, nucleus, plastid | 56.82 | 46.06 |
| CDX90316 | Canola | cytosol | 52.15 | 45.15 |
| CDY12125 | Canola | cytosol | 51.96 | 45.13 |
| CDX69225 | Canola | mitochondrion | 51.03 | 44.98 |
| CDX82040 | Canola | cytosol | 50.47 | 44.78 |
| TraesCS6B01G125700.1 | Wheat | plastid | 50.84 | 44.23 |
| TraesCS6A01G097200.1 | Wheat | plastid | 50.65 | 44.21 |
| Os02t0133200-01 | Rice | plasma membrane | 51.4 | 43.51 |
| TraesCS6D01G085200.1 | Wheat | plastid | 49.91 | 43.41 |
| CDY13810 | Canola | cytosol | 50.65 | 42.88 |
| CDY11957 | Canola | cytosol | 35.51 | 42.7 |
| HORVU6Hr1G017580.5 | Barley | plastid | 49.91 | 42.52 |
| Zm00001d015175_P002 | Maize | plastid | 51.22 | 42.48 |
| CDY39363 | Canola | cytosol | 46.92 | 42.4 |
| CDX85889 | Canola | cytosol | 48.04 | 42.34 |
| CDX68133 | Canola | cytosol | 48.04 | 42.27 |
| CDY29415 | Canola | nucleus | 47.1 | 40.98 |
| CDY17730 | Canola | cytosol | 28.97 | 38.56 |
| CDY52084 | Canola | cytosol | 42.06 | 38.33 |
| CDX77773 | Canola | cytosol | 28.79 | 37.84 |
| CDY42378 | Canola | nucleus | 44.11 | 36.7 |
| CDY10540 | Canola | cytosol, nucleus, plastid | 43.93 | 36.55 |
| CDX77382 | Canola | cytosol | 42.06 | 36.35 |
| CDY50018 | Canola | vacuole | 43.36 | 36.31 |
| CDY51966 | Canola | cytosol | 38.69 | 34.79 |
| CDY17397 | Canola | cytosol | 38.13 | 34.29 |
| CDY51073 | Canola | mitochondrion, nucleus | 32.71 | 34.25 |
| CDY36780 | Canola | plastid | 36.07 | 33.86 |
| CDY40544 | Canola | cytosol | 15.33 | 24.85 |
| CDY28908 | Canola | cytosol | 15.33 | 24.77 |
| CDY53762 | Canola | cytosol | 15.14 | 24.77 |
| CDY52903 | Canola | cytosol | 15.14 | 24.77 |
| CDY41066 | Canola | cytosol | 15.14 | 24.32 |
| CDY25949 | Canola | cytosol | 14.95 | 24.02 |
| CDY42389 | Canola | cytosol | 14.58 | 24.0 |
| CDX77792 | Canola | cytosol | 14.95 | 23.95 |
| CDY10527 | Canola | cytosol | 14.39 | 23.69 |
| CDY17710 | Canola | cytosol | 14.58 | 23.35 |
| CDY02262 | Canola | cytosol, plastid | 55.33 | 20.54 |
| CDY36781 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | GO:A0A078FFW7 | UniProt:A0A078FFW7 | EnsemblPlants:CDY12126 |
| ProteinID:CDY12126 | ProteinID:CDY12126.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00061117001 | InterPro:IPR001251 |
| InterPro:IPR036865 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 | PFscan:PS50191 | PANTHER:PTHR23324 |
| PANTHER:PTHR23324:SF144 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | TMHMM:TMhelix |
| UniParc:UPI0004EE1D93 | SEG:seg | : | : | : | : |
Description
BnaC03g60420DBnaC03g60420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFW7]
Coordinates
chrLK032017:-:727942..730559
Molecular Weight (calculated)
61774.1 Da
IEP (calculated)
9.329
GRAVY (calculated)
-0.578
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MTETMVEISE DEKRLTKLCS LKKKAINATN KFKHSMTKRG RRHSRVRCVS IVDEIDTEEL RQVDAFRQAL ILEELLPSKH DDHHMMLRFL RARKFDIEKA
101: KQMWADMLNW RKDYGTDTIM EDFDFGEIDE VVKYYPQGYH GVDKEGRPVY IERLGQVDAV KLMKVTTIDR YVKYHVKEFE KTFNVKFPAC SIAAKRHIDQ
201: STTILDVQGV GLNNFNKAAK DLLQSIQKID NDNYPETLNR MFIINAGYGF RLVWNGVKSF LDPKTTAKIH VLGNKFQSKL LEIINANELP EFLGGKCTCA
301: DKGGCMRSDK GPWNDPEIFK LVQNGEGRCP RKSLSGIEEK TISVCKNVTE EKREVFEPEE TYKKAAAEME KFIDKTVDTG AYPTQEHHKA KNIVPDPKDL
401: LLSPAVERKG YLYGSMMALL MGIVGVMRLT KNMPRKLTQG NVYPDGVTVM PTQEYRAMVK RMTDLEEKCK SMEAAQVAIS MEREKVLDAA LRRVDQLELQ
501: LSETKKALDE TMTRQHEIMA YIEKKKKKKR KFLFF
101: KQMWADMLNW RKDYGTDTIM EDFDFGEIDE VVKYYPQGYH GVDKEGRPVY IERLGQVDAV KLMKVTTIDR YVKYHVKEFE KTFNVKFPAC SIAAKRHIDQ
201: STTILDVQGV GLNNFNKAAK DLLQSIQKID NDNYPETLNR MFIINAGYGF RLVWNGVKSF LDPKTTAKIH VLGNKFQSKL LEIINANELP EFLGGKCTCA
301: DKGGCMRSDK GPWNDPEIFK LVQNGEGRCP RKSLSGIEEK TISVCKNVTE EKREVFEPEE TYKKAAAEME KFIDKTVDTG AYPTQEHHKA KNIVPDPKDL
401: LLSPAVERKG YLYGSMMALL MGIVGVMRLT KNMPRKLTQG NVYPDGVTVM PTQEYRAMVK RMTDLEEKCK SMEAAQVAIS MEREKVLDAA LRRVDQLELQ
501: LSETKKALDE TMTRQHEIMA YIEKKKKKKR KFLFF
001: MADTMVAHMD RHNKIDVEIS EDDKRLTKLC SLKKKAINAT NKFKHSMTKK GRRHSRVACV SIVDEIDTEE LQAVDAFRQA LILDELLPSK HDDHHMMLRF
101: LRARKFDLEK AKQMWSDMLN WRKEYGADTI MEDFDFKEIE EVVKYYPQGY HGVDKEGRPI YIERLGQVDA TKLMKVTTID RYVKYHVKEF EKTFNVKFPA
201: CSIAAKRHID QSTTILDVQG VGLSNFNKAA KDLLQSIQKI DNDNYPETLN RMFIINAGCG FRLLWNTVKS FLDPKTTAKI HVLGNKYQTK LLEIIDANEL
301: PEFLGGKCTC ADKGGCMRSD KGPWNDPEIF KLVQNGEGRC LRRSLSGIEE KTIFEYNNET KKKCEPEETH KQSAAEMEKK FIDTNVDAAA AADWPTKLNK
401: AEKNPTDLKD VYSAVNPLER KGYLYGSVMA LLMGIVGVMR LTKNMPRRLT EANVYSREGS AVYQDGVTVM SKQEYIAMVK KITDLEEKCK SMEAQAAFYM
501: EREKTLDAAL RRIDQLELQL SETNKALDET MTRQHEIMAF IEKKKKKKRK FLLF
101: LRARKFDLEK AKQMWSDMLN WRKEYGADTI MEDFDFKEIE EVVKYYPQGY HGVDKEGRPI YIERLGQVDA TKLMKVTTID RYVKYHVKEF EKTFNVKFPA
201: CSIAAKRHID QSTTILDVQG VGLSNFNKAA KDLLQSIQKI DNDNYPETLN RMFIINAGCG FRLLWNTVKS FLDPKTTAKI HVLGNKYQTK LLEIIDANEL
301: PEFLGGKCTC ADKGGCMRSD KGPWNDPEIF KLVQNGEGRC LRRSLSGIEE KTIFEYNNET KKKCEPEETH KQSAAEMEKK FIDTNVDAAA AADWPTKLNK
401: AEKNPTDLKD VYSAVNPLER KGYLYGSVMA LLMGIVGVMR LTKNMPRRLT EANVYSREGS AVYQDGVTVM SKQEYIAMVK KITDLEEKCK SMEAQAAFYM
501: EREKTLDAAL RRIDQLELQL SETNKALDET MTRQHEIMAF IEKKKKKKRK FLLF
Arabidopsis Description
SFH2Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 [Source:UniProtKB/Swiss-Prot;Acc:F4JVA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.