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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G36490.1 HORVU4Hr1G035250.1 AT4G26630.1 25387881
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G097200.1 Wheat plastid 90.92 93.15
TraesCS6B01G125700.1 Wheat plastid 90.45 92.36
TraesCS6D01G085200.1 Wheat plastid 90.13 92.03
Os02t0133200-01 Rice plasma membrane 79.14 78.64
OQU84321 Sorghum cytosol 70.38 78.37
Zm00001d015175_P002 Maize plastid 73.73 71.78
KRH76738 Soybean plastid 45.38 59.25
KRH28724 Soybean plastid 44.59 57.97
GSMUA_Achr6P03210_001 Banana cytosol 54.78 57.91
KRH69861 Soybean plastid 49.68 56.22
HORVU2Hr1G082530.1 Barley cytosol 51.43 55.79
KRH08168 Soybean plastid 49.2 55.68
GSMUA_Achr5P23630_001 Banana cytosol 53.34 55.65
AT4G36490.1 Thale cress plastid 47.77 55.25
KRH24439 Soybean plastid 28.5 54.57
HORVU1Hr1G088100.1 Barley cytosol 13.85 54.04
CDX75444 Canola cytosol 45.22 53.18
AT2G18180.1 Thale cress plastid 47.13 53.05
CDX69071 Canola cytosol 45.06 53.0
CDX89709 Canola cytosol, mitochondrion 38.06 52.53
CDY15887 Canola cytosol 45.54 52.09
CDX99586 Canola cytosol 45.54 52.0
PGSC0003DMT400043532 Potato cytosol 45.86 51.71
AT2G21540.2 Thale cress cytosol, nucleus, vacuole 45.06 51.64
Bra011544.1-P Field mustard cytosol, plastid 40.61 51.52
Bra034638.1-P Field mustard cytosol 44.59 51.47
GSMUA_Achr2P14280_001 Banana cytosol, nucleus, plastid 53.98 51.36
Solyc11g040280.1.1 Tomato cytosol 48.89 51.34
KRH51503 Soybean cytosol 46.82 51.31
CDY45318 Canola cytosol, plastid 40.76 51.2
KRH29420 Soybean cytosol, nucleus, plastid 45.86 51.15
Solyc10g053900.1.1 Tomato cytosol, plastid 46.34 51.14
KRH60806 Soybean cytosol 46.5 51.05
PGSC0003DMT400001903 Potato cytosol, nucleus, plastid 46.66 51.05
AT4G34580.2 Thale cress cytosol 44.9 50.9
Solyc01g109860.2.1 Tomato cytosol, nucleus, plastid 46.5 50.87
VIT_04s0023g02400.t01 Wine grape cytosol, nucleus, plastid 43.31 50.75
Bra030294.1-P Field mustard cytosol, nucleus, plastid 39.01 50.2
PGSC0003DMT400021690 Potato nucleus 48.09 50.0
CDY12126 Canola cytosol 42.52 49.91
Bra017663.1-P Field mustard cytosol, plastid 36.15 49.78
AT2G16380.1 Thale cress cytosol 43.31 49.73
CDX90317 Canola cytosol 42.36 49.53
CDY17469 Canola cytosol 44.9 49.39
VIT_03s0038g04480.t01 Wine grape cytosol 48.73 49.35
Bra010699.1-P Field mustard cytosol 42.2 49.35
AT4G39180.1 Thale cress cytosol 43.31 49.1
CDX76291 Canola cytosol 44.9 47.64
CDX69225 Canola mitochondrion 44.27 45.8
HORVU7Hr1G037200.1 Barley nucleus 15.29 44.86
HORVU3Hr1G112740.3 Barley nucleus 15.61 43.75
HORVU7Hr1G040650.2 Barley cytosol, nucleus, plastid 15.45 43.3
HORVU2Hr1G111160.14 Barley mitochondrion 24.52 39.09
HORVU6Hr1G071770.19 Barley cytosol 37.26 37.86
HORVU3Hr1G065830.17 Barley cytosol, mitochondrion, plastid 39.81 37.37
HORVU6Hr1G017570.5 Barley cytosol, nucleus, plastid 44.27 37.32
HORVU1Hr1G091860.1 Barley cytosol 9.55 36.81
HORVU7Hr1G048880.11 Barley mitochondrion 36.94 35.86
HORVU1Hr1G078880.9 Barley cytosol, nucleus 41.4 35.67
HORVU5Hr1G052230.2 Barley cytosol 12.42 23.21
HORVU7Hr1G090330.11 Barley cytosol, nucleus, plastid 11.78 21.76
HORVU6Hr1G032510.1 Barley cytosol, nucleus, peroxisome 11.78 21.51
CDY02262 Canola cytosol, plastid 42.83 18.67
Bra013077.1-P Field mustard cytosol, plastid 42.83 18.44
Protein Annotations
Gene3D:1.10.8.20Gene3D:3.40.525.10MapMan:35.1UniProt:A0A287TG22InterPro:CRAL-TRIO_domInterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_domInterPro:CRAL/TRIO_N_dom_sfncoils:CoilEnsemblPlantsGene:HORVU6Hr1G017580EnsemblPlants:HORVU6Hr1G017580.5InterPro:IPR001251
InterPro:IPR036865PFAM:PF00650PFAM:PF03765PRINTS:PR00180PFscan:PS50191PANTHER:PTHR23324
PANTHER:PTHR23324:SF55SMART:SM00516SMART:SM01100SUPFAM:SSF46938SUPFAM:SSF52087UniParc:UPI000B480338
SEG:seg:::::
Description
No Description!
Coordinates
chrchr6H:-:41712459..41716457
Molecular Weight (calculated)
68950.8 Da
IEP (calculated)
8.265
GRAVY (calculated)
-0.411
Length
628 amino acids
Sequence
(BLAST)
001: MSATPGSATA AAADGAASTP TSRAPSMASS ASLRHRAMSA SSKMLRNSLS RRSGRQRSSK VMSVAIEDVR DAKEAASVDA FRQTLVLEEL LPARHDDYHM
101: MLRFLKARKF EIDKSKQMWS DMLQWRKEFG TDTIMDDFIF EEVEQVLEHY PQGHHGVDKD GRPIYIEKLG AIDTTKLLQV TSMDRYVRYH VREFERAFAL
201: KFPACSISAK RHVDQSTTIL DVSGVGYKNF NKAARDLIGQ LQKIDGDNFP ETLCRMFIIN AGQGFRLLWN TVKSFLDPKT TAKIHVLGNK YQSKLLEVID
301: PSELPEFLGG TCVCEGGGCM RSDKGPWKDP EIIKMVQCGL GRCGLNSSDP ASAEEKIVTE DEAAPATKKQ ESMRAADSPK VVRDKIEHPP QMSPLHEVAN
401: EETKAAPLDG QGGSSAPYDD LFPMVDKGME FNWNGEMSAE KLALARDMYA SLPDAYKHGD AGDRQVVTGF MAFVMGVVAM FRVGKIAPKR AMDAAMGIAT
501: MEAMAKNRKL LQAQGQGGGG GGPVVVAGVS TAQYEALAKR VGELEEKMAA LGSRPPEMPA DKAEQLAAAA TRLDTLEAEL EATKKLLETS KGQQEEVLAY
601: IEKKKKKKGM VRPTFSFARA YHSTRLIS
Best Arabidopsis Sequence Match ( AT2G18180.1 )
(BLAST)
001: MSLNVDLDVC VLERPNVCSF KKRSCSKLSC SLTKKRRSSK VMSVEIFEDE HDAEELKVVD AFRQVLILDE LLPDKHDDYH MMLRFLKARK FDLEKTNQMW
101: SDMLRWRKEF GADTVMEDFE FKEIDEVLKY YPQGHHGVDK EGRPVYIERL GQVDSTKLMQ VTTMDRYVNY HVMEFERTFN VKFPACSIAA KKHIDQSTTI
201: LDVQGVGLKN FNKAARDLIT RLQKVDGDNY PETLNRMFII NAGSGFRMLW NTVKSFLDPK TTAKIHVLGN KYQSKLLEII DASELPEFLG GSCTCADNGG
301: CMRSDKGPWN NPDIMKRVNN GDHICSKRSQ ADNAGENIIS QGNNSAVEEA PETDQSQPSP CQNVVVAHPA WNIPEAHKFS LSKRDVYAIQ EACKATNESG
401: RSPIFTGVMA FVMGVVTMIR VTKNVPRKLT ESTIYSSPVY CDENSMNKSS MHGKKMATTT ISGEDFMAVM KRMAELEQKV TNLSAQPATM PPEKEEMLNA
501: AISRADFLEQ ELAATKKALD DSLTRQEDLV AYVERKKKKK KLVRFQINAY LTNFCFGV
Arabidopsis Description
SFH10Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI13]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.