CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034638.1-P	Field mustard	cytosol	91.55	99.63
CDY17469	Canola	cytosol	94.93	98.42
AT4G34580.2	Thale cress	cytosol	86.15	92.06
CDX69071	Canola	cytosol	81.93	90.82
CDX75444	Canola	cytosol	81.93	90.82
CDY45318	Canola	cytosol, plastid	72.13	85.4
CDX89709	Canola	cytosol, mitochondrion	57.77	75.16
CDY15888	Canola	cytosol	30.57	63.96
CDX99587	Canola	cytosol, mitochondrion	30.24	63.25
CDY15887	Canola	cytosol	57.26	61.75
CDX99586	Canola	cytosol	57.09	61.45
CDY12126	Canola	cytosol	53.21	58.88
CDX90317	Canola	cytosol	53.04	58.47
KRH24439	Soybean	plastid	32.26	58.23
PGSC0003DMT400043532	Potato	cytosol	53.55	56.91
KRH51503	Soybean	cytosol	55.07	56.89
KRH60806	Soybean	cytosol	53.89	55.77
Solyc10g053900.1.1	Tomato	cytosol, plastid	53.38	55.54
KRH29420	Soybean	cytosol, nucleus, plastid	52.7	55.42
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	53.38	55.05
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	53.21	54.88
PGSC0003DMT400021690	Potato	nucleus	53.38	52.32
Solyc11g040280.1.1	Tomato	cytosol	52.7	52.17
GSMUA_Achr5P23630_001	Banana	cytosol	52.53	51.66
HORVU2Hr1G082530.1	Barley	cytosol	50.34	51.47
OQU84321	Sorghum	cytosol	48.99	51.42
TraesCS2B01G354800.2	Wheat	nucleus	51.18	51.27
GSMUA_Achr6P03210_001	Banana	cytosol	51.35	51.18
TraesCS2A01G327200.2	Wheat	nucleus	51.01	51.1
TraesCS2D01G335700.2	Wheat	nucleus	51.01	51.1
Os02t0440900-00	Rice	cytosol	51.18	50.67
Os10t0122600-01	Rice	cytosol, nucleus, plastid	51.01	50.5
OQU85018	Sorghum	nucleus	51.69	49.92
Zm00001d016601_P006	Maize	cytosol	51.01	49.92
CDX90316	Canola	cytosol	50.84	48.71
CDY12125	Canola	cytosol	50.51	48.54
CDX82040	Canola	cytosol	48.31	47.43
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	52.7	47.27
CDY39363	Canola	cytosol	46.62	46.62
CDX69225	Canola	mitochondrion	47.47	46.29
CDY11954	Canola	cytosol	15.2	46.15
TraesCS6A01G097200.1	Wheat	plastid	47.64	46.0
Zm00001d015175_P002	Maize	plastid	50.0	45.89
Os02t0133200-01	Rice	plasma membrane	48.82	45.73
TraesCS6D01G085200.1	Wheat	plastid	47.47	45.69
CDY13810	Canola	cytosol	48.65	45.57
TraesCS6B01G125700.1	Wheat	plastid	47.13	45.37
HORVU6Hr1G017580.5	Barley	plastid	47.64	44.9
CDY29415	Canola	nucleus	46.45	44.72
CDX68133	Canola	cytosol	45.1	43.91
CDX85889	Canola	cytosol	44.93	43.82
CDY11957	Canola	cytosol	30.41	40.45
CDY17730	Canola	cytosol	27.2	40.05
CDX77773	Canola	cytosol	27.2	39.56
CDY52084	Canola	cytosol	36.32	36.63
CDX77382	Canola	cytosol	36.49	34.9
CDY50018	Canola	vacuole	36.82	34.12
CDY51966	Canola	cytosol	33.95	33.78
CDY42378	Canola	nucleus	36.49	33.59
CDY17397	Canola	cytosol	33.61	33.45
CDY10540	Canola	cytosol, nucleus, plastid	36.32	33.44
CDY36780	Canola	plastid	31.25	32.46
CDY51073	Canola	mitochondrion, nucleus	27.7	32.09
CDY02262	Canola	cytosol, plastid	65.88	27.06
CDY52903	Canola	cytosol	13.68	24.77
CDY53762	Canola	cytosol	13.68	24.77
CDY10527	Canola	cytosol	13.18	24.0
CDY42389	Canola	cytosol	13.18	24.0
CDY40544	Canola	cytosol	13.18	23.64
CDY28908	Canola	cytosol	13.18	23.57
CDX77792	Canola	cytosol	12.67	22.46
CDY41066	Canola	cytosol	12.5	22.22
CDY25949	Canola	cytosol	12.5	22.22
CDY17710	Canola	cytosol	12.33	21.86
CDY36781	Canola	extracellular	0.0	0.0

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078CGF7	EnsemblPlants:CDX76291	ProteinID:CDX76291
ProteinID:CDX76291.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
EnsemblPlantsGene:GSBRNA2T00126657001	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF77	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	TMHMM:TMhelix	UniParc:UPI0004EDCF54	SEG:seg	:	:

Description

BnaA08g11090D

Coordinates

chrLK031807:+:168282..171629

Molecular Weight (calculated)

67816.2 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.499

Length

592 amino acids

Sequence
(BLAST)

001: MSEEERKIVK MCSLKKKAIS ASNRFKNSFK KKGRRSTSRV MSVPIEDDID AEDLQALDAF RQALVLDELL PSKLDDLHMM LRFLRARKFD IEKAKQMWAD
101: MIQWRKDFGA DTIIEDFEFE EIDDVMKHYP QGYHGVDKEG RPVYIERLGQ IDANKLLQVT TMDRYVKYHV KEFEKTFKIK FPACSVAANK HIDQSTTILD
201: VQGVGLKNFS KSARELLQRL CKIDNENYPE TLNRMFIINA GSGFRLLWST VKSFLDPKTT AKIHVLGNKY HSKLLEVIDA SELPEFFGGA CTCEDKGGCM
301: RSDKGPWNDP EVLKMAINKE AKCSPISEDE HKHVDQGRST SVPESLERNN KKRDEDNAHE KQIATIDKSM DTAWPVKTQK SESFKVSKGL ECYVRKGAPK
401: KRDGLLVGGV MAFVMGIVAM VRLSKDVPRK LTEAALYGNS VCYEESMSKQ NKAQFAAPVS SSEYMLMVKR MAELEDKCMF LDLKPANVDS EKEEKLQAAL
501: NRVQVLEQEL TETKKALEEA LVSQKEILAY IEKKKKKKKL VRTKKIINIY HSTSHNCFYS FFLKQLFLFI IIVLHFSSFS ASECAKRKGM RS

Best Arabidopsis Sequence Match ( AT4G34580.1 )
(BLAST)

001: MAETKPEIEM SEEERKIVKI SSLKKKAINA SNRFKNSFKK KGRRSSSRVM SVPIEDDIDA EDLQALDAFR QALILDELLP SKLDDLHMML RFLRARKFDI
101: EKAKQMWSDM IQWRKDFGAD TIIEDFDFEE IDEVMKHYPQ GYHGVDKEGR PVYIERLGQI DANKLLQVTT MDRYVKYHVK EFEKTFKVKF PSCSVAANKH
201: IDQSTTILDV QGVGLKNFSK SARELLQRLC KIDNENYPET LNRMFIINAG SGFRLLWSTV KSFLDPKTTA KIHVLGNKYH SKLLEVIDAS ELPEFFGGAC
301: TCEDKGGCMR SDKGPWNDPE VLKIAINREA KCSPISEDEH KHVDQGRSTS GFESLERIKK KTDEDNVYEK QIATIDKSMD MAWLAKTQKA ENFPISKGLE
401: CYVRKGAPKK GDGLLVGGVM AFVMGIVAMV RLSKDVPRKL TEAALYGNSV CYEESTKSKQ NQGQFAAPVS SSEYMLMVKR MAELEDKCMF LDLKPAHVES
501: EKEEKLQAAL NRVQVLEQEL TETKKALEEA LVSQKEILAY IEKKKKKKKL FFGF

Arabidopsis Description

SFH1SRH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V672]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.