Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36490.1 | EER91265 | AT4G26630.1 | 25387881 |
| AT4G36490.1 | OQU91413 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016601_P006 | Maize | cytosol | 90.38 | 91.57 |
| Os10t0122600-01 | Rice | cytosol, nucleus, plastid | 79.45 | 81.44 |
| Os02t0440900-00 | Rice | cytosol | 78.14 | 80.1 |
| TraesCS2B01G354800.2 | Wheat | nucleus | 76.35 | 79.19 |
| HORVU2Hr1G082530.1 | Barley | cytosol | 74.55 | 78.93 |
| TraesCS2D01G335700.2 | Wheat | nucleus | 76.02 | 78.85 |
| TraesCS2A01G327200.2 | Wheat | nucleus | 76.02 | 78.85 |
| GSMUA_Achr5P23630_001 | Banana | cytosol | 62.64 | 63.79 |
| GSMUA_Achr6P03210_001 | Banana | cytosol | 61.34 | 63.3 |
| KRH28724 | Soybean | plastid | 45.68 | 57.97 |
| KRH76738 | Soybean | plastid | 45.35 | 57.8 |
| GSMUA_Achr2P14280_001 | Banana | cytosol, nucleus, plastid | 62.15 | 57.73 |
| OQU84321 | Sorghum | cytosol | 53.02 | 57.62 |
| CDX75444 | Canola | cytosol | 49.59 | 56.93 |
| CDX69071 | Canola | cytosol | 49.43 | 56.74 |
| KRH24439 | Soybean | plastid | 30.34 | 56.71 |
| AT2G21540.2 | Thale cress | cytosol, nucleus, vacuole | 50.41 | 56.39 |
| CDY15887 | Canola | cytosol | 50.41 | 56.28 |
| CDX99586 | Canola | cytosol | 50.24 | 56.0 |
| Bra034638.1-P | Field mustard | cytosol | 49.43 | 55.7 |
| Bra030294.1-P | Field mustard | cytosol, nucleus, plastid | 44.21 | 55.53 |
| AT4G36490.1 | Thale cress | plastid | 49.1 | 55.43 |
| CDY12126 | Canola | cytosol | 47.96 | 54.95 |
| AT4G34580.2 | Thale cress | cytosol | 49.59 | 54.87 |
| PGSC0003DMT400043532 | Potato | cytosol | 49.76 | 54.76 |
| Bra011544.1-P | Field mustard | cytosol, plastid | 44.21 | 54.75 |
| CDX89709 | Canola | cytosol, mitochondrion | 40.62 | 54.73 |
| KRH51503 | Soybean | cytosol | 51.06 | 54.62 |
| Bra010699.1-P | Field mustard | cytosol | 47.8 | 54.56 |
| CDX90317 | Canola | cytosol | 47.8 | 54.56 |
| AT4G39180.1 | Thale cress | cytosol | 49.1 | 54.33 |
| PGSC0003DMT400001903 | Potato | cytosol, nucleus, plastid | 50.73 | 54.18 |
| Solyc01g109860.2.1 | Tomato | cytosol, nucleus, plastid | 50.24 | 53.66 |
| Solyc10g053900.1.1 | Tomato | cytosol, plastid | 49.76 | 53.6 |
| CDY45318 | Canola | cytosol, plastid | 43.72 | 53.6 |
| CDY17469 | Canola | cytosol | 49.92 | 53.59 |
| KRH08168 | Soybean | plastid | 48.29 | 53.33 |
| KRH29420 | Soybean | cytosol, nucleus, plastid | 48.94 | 53.29 |
| KRH69861 | Soybean | plastid | 47.96 | 52.97 |
| KRH60806 | Soybean | cytosol | 49.43 | 52.97 |
| Bra017663.1-P | Field mustard | cytosol, plastid | 39.31 | 52.85 |
| AT2G18180.1 | Thale cress | plastid | 47.31 | 51.97 |
| CDX76291 | Canola | cytosol | 49.92 | 51.69 |
| Solyc11g040280.1.1 | Tomato | cytosol | 49.92 | 51.17 |
| PGSC0003DMT400021690 | Potato | nucleus | 50.41 | 51.16 |
| VIT_04s0023g02400.t01 | Wine grape | cytosol, nucleus, plastid | 44.7 | 51.12 |
| AT2G16380.1 | Thale cress | cytosol | 45.51 | 51.01 |
| KXG29407 | Sorghum | cytosol, nucleus, plastid | 51.88 | 50.8 |
| VIT_03s0038g04480.t01 | Wine grape | cytosol | 50.9 | 50.32 |
| KXG22454 | Sorghum | cytosol | 46.33 | 45.88 |
| KXG33199 | Sorghum | cytosol | 44.7 | 45.29 |
| CDX69225 | Canola | mitochondrion | 44.37 | 44.81 |
| OQU80990 | Sorghum | cytosol | 40.62 | 41.02 |
| KXG30865 | Sorghum | cytosol | 41.11 | 40.84 |
| KXG40069 | Sorghum | nucleus | 41.92 | 40.79 |
| EER96946 | Sorghum | cytosol, nucleus, plastid | 39.8 | 40.73 |
| OQU88968 | Sorghum | cytosol | 23.33 | 34.79 |
| EES04709 | Sorghum | cytosol | 13.21 | 24.77 |
| EER96447 | Sorghum | cytosol | 13.38 | 24.48 |
| EER90026 | Sorghum | cytosol | 12.56 | 23.33 |
| CDY02262 | Canola | cytosol, plastid | 46.66 | 19.85 |
| Bra013077.1-P | Field mustard | cytosol, plastid | 46.66 | 19.6 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:8059595 | UniProt:A0A1Z5RMT9 | InterPro:CRAL-TRIO_dom |
| InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | InterPro:IPR001251 | InterPro:IPR036865 |
| EnsemblPlants:OQU85018 | ProteinID:OQU85018 | ProteinID:OQU85018.1 | PFAM:PF00650 | PFAM:PF03765 | PFscan:PS50191 |
| PANTHER:PTHR23324 | PANTHER:PTHR23324:SF137 | SMART:SM00516 | SMART:SM01100 | EnsemblPlantsGene:SORBI_3004G158100 | SUPFAM:SSF46938 |
| SUPFAM:SSF52087 | unigene:Sbi.19743 | UniParc:UPI000B8BAB2E | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr4:-:50273534..50278319
Molecular Weight (calculated)
68993.3 Da
IEP (calculated)
7.951
GRAVY (calculated)
-0.511
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVLSGSHE HHLSSALDGH YDEKRKSNVE YSEDEKKAKI ASLKKKAMSA SQKFRHSMKR GRKSSKVMSI SILDDREPEE VQAVDAFRQL LVLEELLPSQ
101: HDDYHMMLRF LKARKFDIEK AKQMWSDMLK WRKEFGADTI LEEFEFEEAD KVAECYPQGY HGVDKEGRPV YFERLGQIDV NRLMQVTTMD RFVKNHVKEF
201: EKNFAVKFPA CSIAAKRHID QSTTILDVQG VPHFQGMKQF SKAARDLIGM LQRIDGDNYP ETLCRMFIIN AGQGFRLLWG TVKSFLDPKT TAKIHVLGNK
301: YQSKLLEVID ASELPEIFGG TCQCEGGCMK ADKGPWKDPE IMKMVQSGAG RCGSHSMSSF EVEEKMICED DMYPKKQALF DAETQLAGDG QRSQSQKISR
401: SRIEHPQLSP LHEELMPTSH PTPGSPYSCD VPMVEKAIDA ICKSQGTPAD EKLAITKAII NASNESKPPI YAGIIALVMS IAAMVRVTRN MPGKVLGAAI
501: GGGKPATLSE SKSKIQERQQ PKLSEEAVKE AEDAVSAKRL VELEEKVIAL LTKPASMPVD KEDILQAAVN RVSALEEELA ATKKTLQETL ERQMEIVAYI
601: EKKKKKSKRL FRW
101: HDDYHMMLRF LKARKFDIEK AKQMWSDMLK WRKEFGADTI LEEFEFEEAD KVAECYPQGY HGVDKEGRPV YFERLGQIDV NRLMQVTTMD RFVKNHVKEF
201: EKNFAVKFPA CSIAAKRHID QSTTILDVQG VPHFQGMKQF SKAARDLIGM LQRIDGDNYP ETLCRMFIIN AGQGFRLLWG TVKSFLDPKT TAKIHVLGNK
301: YQSKLLEVID ASELPEIFGG TCQCEGGCMK ADKGPWKDPE IMKMVQSGAG RCGSHSMSSF EVEEKMICED DMYPKKQALF DAETQLAGDG QRSQSQKISR
401: SRIEHPQLSP LHEELMPTSH PTPGSPYSCD VPMVEKAIDA ICKSQGTPAD EKLAITKAII NASNESKPPI YAGIIALVMS IAAMVRVTRN MPGKVLGAAI
501: GGGKPATLSE SKSKIQERQQ PKLSEEAVKE AEDAVSAKRL VELEEKVIAL LTKPASMPVD KEDILQAAVN RVSALEEELA ATKKTLQETL ERQMEIVAYI
601: EKKKKKSKRL FRW
001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KNKFDAENTK FIPMIDKTVN ASTWPTNLHK SNYPEPEDLY
401: SAVKPSQRRG GEGYLFGGVM SLVMGLMTVV RLTKNMPRKL TEAAIYGGEV DKAETTMVSN QEYMSMVKRM AELEEKCRSL DNQPAAFSPE KEQILTAALS
501: RVDELELQLA QTKKTLEETM ATQHVIMAYI DKKKKKKKFF GF
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KNKFDAENTK FIPMIDKTVN ASTWPTNLHK SNYPEPEDLY
401: SAVKPSQRRG GEGYLFGGVM SLVMGLMTVV RLTKNMPRKL TEAAIYGGEV DKAETTMVSN QEYMSMVKRM AELEEKCRSL DNQPAAFSPE KEQILTAALS
501: RVDELELQLA QTKKTLEETM ATQHVIMAYI DKKKKKKKFF GF
Arabidopsis Description
SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [cytosol,nucleus,vacuole]
SUBAcon: [cytosol,nucleus,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.