CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011663_P003	Maize	cytosol	92.4	91.04
Zm00001d043733_P002	Maize	mitochondrion	74.21	81.79
GSMUA_Achr3P28830_001	Banana	nucleus	30.25	69.06
TraesCS3D01G255900.4	Wheat	cytosol	68.76	67.64
TraesCS3B01G287000.6	Wheat	cytosol	69.42	65.83
TraesCS3A01G255000.6	Wheat	cytosol	68.59	65.05
KXG22454	Sorghum	cytosol	65.95	64.46
Os01t0701900-01	Rice	nucleus	70.08	63.19
HORVU3Hr1G065830.17	Barley	cytosol, mitochondrion, plastid	69.59	62.93
Bra030295.1-P	Field mustard	cytosol	28.76	61.48
CDY15888	Canola	cytosol	28.76	61.48
CDX99587	Canola	cytosol, mitochondrion	28.26	60.42
GSMUA_Achr9P22020_001	Banana	cytosol	59.01	56.58
KRH60804	Soybean	cytosol	55.21	53.53
KRH29416	Soybean	cytosol	55.37	53.26
AT4G39170.1	Thale cress	cytosol, nucleus, plastid	54.05	53.26
KRH24438	Soybean	cytosol	54.88	52.78
Solyc01g109870.2.1	Tomato	cytosol	54.38	52.64
CDX82040	Canola	cytosol	52.23	52.4
CDY12125	Canola	cytosol	53.22	52.27
KXG29407	Sorghum	cytosol, nucleus, plastid	53.88	52.08
VIT_03s0038g04470.t01	Wine grape	cytosol	53.72	52.0
PGSC0003DMT400001942	Potato	cytosol	53.55	51.84
CDX90316	Canola	cytosol	52.89	51.78
Bra010700.1-P	Field mustard	cytosol	52.89	51.78
Solyc10g053970.1.1	Tomato	cytosol	52.89	51.36
KRH51499	Soybean	cytosol	54.38	51.33
CDY13810	Canola	cytosol	53.22	50.95
AT2G21520.3	Thale cress	cytosol	53.39	50.71
Bra031196.1-P	Field mustard	cytosol	52.56	50.32
PGSC0003DMT400043545	Potato	cytosol	53.06	49.92
GSMUA_Achr3P28840_001	Banana	mitochondrion	28.43	46.74
GSMUA_Achr1P25320_001	Banana	cytosol	49.42	45.72
OQU85018	Sorghum	nucleus	45.29	44.7
OQU84321	Sorghum	cytosol	40.5	43.44
KXG40069	Sorghum	nucleus	45.12	43.33
KXG30865	Sorghum	cytosol	43.31	42.46
EER96946	Sorghum	cytosol, nucleus, plastid	41.49	41.9
OQU80990	Sorghum	cytosol	41.65	41.52
OQU88968	Sorghum	cytosol	25.95	38.2
EES04709	Sorghum	cytosol	13.39	24.77
EER90026	Sorghum	cytosol	13.06	23.94
EER96447	Sorghum	cytosol	13.22	23.88

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A1B6Q5K8	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001251	InterPro:IPR036865	EnsemblPlants:KXG33199	ProteinID:KXG33199	ProteinID:KXG33199.1	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF69	SMART:SM00516	SMART:SM01100
EnsemblPlantsGene:SORBI_3003G269800	SUPFAM:SSF46938	SUPFAM:SSF52087	TMHMM:TMhelix	UniParc:UPI00081AD828	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:60656908..60660879

Molecular Weight (calculated)

68444.3 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.547

Length

605 amino acids

Sequence
(BLAST)

001: MSATIDRLAT PSAGHEGHAH SDGKRECNSD EENSEGERKP KKGSLKKRAA TAGYKFRHSL RRKSKTKDDN HVASIEDIRD VQELETVERF RQCLLDEGLL
101: PEHHDDYHTM LRFLKARKFN IDKAKHMWSE MLRWRKEFGA DNIEEFDYTE LDEVVKYYPQ FYHGVDKEGR PVYIELIGKV DTNKLVQITT IDRYVKYHVK
201: EFERCLQMRF PACSIAAKRH IDSSTTILDV KGVGLKNFSK DARELIMRLQ KINNDNYPET LYRLYIINAG QGFKMLWGTI KSFLDPETAS KIHVLGNKYQ
301: TKLLEIIDGS ELPEFLGGKC RCEEYGGCPK SDKGPWKDPE IVKRVINGEA NYGRHVLAVS SINQKEVGCT EHSTEQEKGN DASAESISEV EDVSSPTALV
401: DPISPNLTHV DESKFPGRAS SSDAPPITGD SIPAVDKVVD ACSNPRNSST PSSSGSFSLR NIPATLGGLK TRIVAWSTIL VLSLLAFLRS VLSIVTKRLS
501: NQAITCDHYS ADFRQGYTGN GTLTSVLTRL GELEEKIQTL EAKPPQVPFE KEELLRTSVY RVDVLEAELI SMKKVLYETL IRQDELLAYI DQQQTAKFCR
601: RKFCF

Best Arabidopsis Sequence Match ( AT4G39170.1 )
(BLAST)

001: MSGPVDRFAI PCFEGILSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KRRKSDVRVS SVSIEDVRDV EELQAVDEFR QALVMEELLP
101: HKHDDYHMML RFLKARKFDI EKAKHMWADM IQWRKEFGTD TIIQDFQFEE IDEVLKYYPH GYHSVDKEGR PVYIERLGKV DPNKLMQVTT LDRYIRYHVK
201: EFERSFMLKF PACTIAAKKY IDSSTTILDV QGVGLKNFTK SARELITRLQ KIDGDNYPET LHQMFIINAG PGFRLLWSTV KSFLDPKTTS KIHVLGCKYQ
301: SKLLEIIDSS ELPEFLGGAC TCADQGGCML SDKGPWKNPE IVKMVLHGGA HRAKQVVKVL NSDGKVIAYA KPSYPWIKGS DTSTAESGSE AEDIVVSPKA
401: VKSYSHLRLT PVREEAKVGS GETSFAGSFA GYDEYVPMVD KAVDATWKVK PTAINRAPSK GAHMPPNVPK DHESFSARVL VTFMAFVMAI LTFFRTVSNR
501: VVTKQLPPPP SQPQIEGSAA AEEADLLNSV LKKLTELEEK IGALQSKPSE MPYEKEELLN AAVCRVDALE AELIATKKAL YEALMRQEEL LAYIDRQEAA
601: QHQKKNKRKQ MFCF

Arabidopsis Description

SFH6Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 [Source:UniProtKB/Swiss-Prot;Acc:F4JVA6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.