CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005995_P003	Maize	nucleus	92.15	92.15
Os09t0481100-01	Rice	nucleus	76.13	74.63
OQU80990	Sorghum	cytosol	71.62	70.68
Zm00001d043774_P001	Maize	cytosol	9.52	67.06
GSMUA_Achr4P09770_001	Banana	cytosol	43.24	56.8
KXG30865	Sorghum	cytosol	54.09	52.51
GSMUA_Achr3P04130_001	Banana	nucleus	53.76	51.69
KXG40069	Sorghum	nucleus	53.42	50.79
GSMUA_Achr5P04200_001	Banana	plastid	51.25	49.12
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	53.09	48.18
KRH45371	Soybean	cytosol	35.06	47.73
CDY11954	Canola	cytosol	15.36	47.18
VIT_19s0015g01160.t01	Wine grape	cytosol	48.75	47.02
KXG29407	Sorghum	cytosol, nucleus, plastid	48.08	46.01
CDY11957	Canola	cytosol	33.72	45.39
KRH62508	Soybean	cytosol	46.91	45.32
KRH56402	Soybean	cytosol	46.91	45.32
Solyc07g066090.2.1	Tomato	nucleus	46.41	44.84
KRH07662	Soybean	cytosol	46.24	44.75
PGSC0003DMT400057292	Potato	nucleus	46.08	44.66
AT1G55690.4	Thale cress	nucleus	45.74	43.84
CDY10540	Canola	cytosol, nucleus, plastid	46.74	43.55
CDY42378	Canola	nucleus	46.41	43.23
KXG22454	Sorghum	cytosol	43.91	42.49
CDY50018	Canola	vacuole	44.91	42.1
Bra030841.1-P	Field mustard	nucleus	41.9	41.9
Solyc10g005740.1.1	Tomato	nucleus	42.9	41.59
KXG33199	Sorghum	cytosol	41.9	41.49
OQU84321	Sorghum	cytosol	38.06	40.43
OQU85018	Sorghum	nucleus	40.73	39.8
Bra002841.1-P	Field mustard	cytosol	34.72	39.77
CDY51073	Canola	mitochondrion, nucleus	33.89	39.73
PGSC0003DMT400022405	Potato	cytosol, nucleus	38.23	39.35
AT5G56160.1	Thale cress	cytosol	37.9	39.34
CDY51966	Canola	cytosol	39.07	39.33
CDY17397	Canola	cytosol	38.9	39.16
CDY36780	Canola	plastid	36.39	38.25
OQU88968	Sorghum	cytosol	25.38	36.98
Bra028944.1-P	Field mustard	plastid	31.22	26.87
EER96447	Sorghum	cytosol	14.52	25.97
Bra038012.1-P	Field mustard	cytosol	44.57	25.24
EER90026	Sorghum	cytosol	13.69	24.85
EES04709	Sorghum	cytosol	13.02	23.85
Bra002840.1-P	Field mustard	cytosol	0.17	1.3
CDY36781	Canola	extracellular	0.17	0.6

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	EntrezGene:8055846	UniProt:C5X3S2	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlants:EER96946	ProteinID:EER96946
ProteinID:EER96946.1	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PANTHER:PTHR23324	PANTHER:PTHR23324:SF65	SMART:SM00516	SMART:SM01100	EnsemblPlantsGene:SORBI_3002G241700	SUPFAM:SSF46938
SUPFAM:SSF52087	unigene:Sbi.20920	UniParc:UPI0001A83728	RefSeq:XP_002460425.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:63139891..63145404

Molecular Weight (calculated)

68381.6 Da

IEP (calculated)

7.174

GRAVY (calculated)

-0.524

Length

599 amino acids

Sequence
(BLAST)

001: MSVSHADEHE ISLCDPNSED DRRRRKIGSL PRKAIHALRK KRARRRVTDF RFPAAISIED VRDAEEERAV AAFRDRLAAH RLLPDKHDDY HMMLRFLKAR
101: KFDSEKAMQM WSEMLRWRKE FGADTILEDF EFDELDDVLQ YYPQGYHGVD REGRPVYIER LGKVDPNKLM QITTVDRYIK YHVQEFERAF RERFPACTLA
201: AKRHIDSTTT ILDVQGVGFK NFSKTARELV QRMQRVDSDY YPETLHQMYV VNAGSGFKLI WNSIKGFLDP KTSSKIHVLG SNYQSRLIEV IDSSELPKFL
301: GGSCTCSDKG GCLGSNRGPW NDPVIMKLIH SMEGGSTREI KQVSDGDERS GSSLRTENLK GMLSDISNAE SESDVDDVGL TVVQKSTDHS LLTPVHEEVK
401: GSDSSIFCSS GSKHLLDMTP PQGSPPMEVP IQLTCQKYFP TFGWLNNLGS TYISLHGTSA GRTLENLVTG LIAVLIRISS FFHLFVYRQE RFLENVHPYA
501: ASEQPKPQVV REEDMSACLQ RLKKLESLCD HLMSKPPDMP KEKELLLLQS FDRIKSLEAE LDMTKKALQA AVEKQMELVD TVEALQHRSS SVRRRFCCS

Best Arabidopsis Sequence Match ( AT2G21520.1 )
(BLAST)

001: MSGPLDRFAR PCFEGFLSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KSGRRKSDGR VSSVSIEDVR DVEELQAVDA FRQSLLMDEL
101: LPDRHDDYHM MLRFLKARKF DVEKAKQMWA DMIQWRKEFG TDTIIQDFDF EEINEVLKHY PQCYHGVDKE GRPIYIERLG KVDPNRLMQV TSMDRYVRYH
201: VKEFERSFMI KFPSCTISAK RHIDSSTTIL DVQGVGLKNF NKSARDLITR LQKIDGDNYP ETLHQMFIIN AGPGFRLLWN TVKSFLDPKT SAKIHVLGYK
301: YLSKLLEVID VNELPEFLGG ACTCADQGGC MLSDKGPWKN PEIVKMVLHG GAHRARQVVK VLNSEGKVIA YAKPSYTWIK GSDTSTAESG SDAEDIGSPK
401: AIKSFSHLRL TPVREEAKIA GETSLAGSFP GYDEYVPMVD KAVDATWKVK PAIQRVASRG ALMSPTVPKD HEGIKARVLV MFMAFLMAVF TFFRTVTKKL
501: PATTTSSPAE TQGNAIELGS NGEGVKEECR PPSPVPDLTE TDLLNCVTKK LTELEGKIGT LQSKPNEMPY EKEELLNAAV CRVDALEAEL IATKKALYEA
601: LMRQEELLAY IDRQEEAQFQ KMKKKKKKHL FCF

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:B3H588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.