Factsheet for Solyc10g005740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022405	Potato	cytosol, nucleus	85.28	90.55
Zm00001d039981_P001	Maize	cytosol	14.4	72.36
Solyc07g066090.2.1	Tomato	nucleus	72.17	71.94
HORVU1Hr1G088100.1	Barley	cytosol	17.31	66.46
Zm00001d031251_P001	Maize	cytosol, mitochondrion	13.43	64.34
VIT_19s0015g01160.t01	Wine grape	cytosol	63.27	62.96
HORVU7Hr1G037200.1	Barley	nucleus	20.87	60.28
KRH62508	Soybean	cytosol	59.39	59.19
KRH56402	Soybean	cytosol	58.74	58.55
HORVU7Hr1G040650.2	Barley	cytosol, nucleus, plastid	21.2	58.48
AT1G55690.4	Thale cress	nucleus	58.58	57.92
HORVU3Hr1G112740.3	Barley	nucleus	20.71	57.14
KRH45371	Soybean	cytosol	40.45	56.82
KRH07662	Soybean	cytosol	55.99	55.9
CDY42378	Canola	nucleus	57.93	55.68
CDY10540	Canola	cytosol, nucleus, plastid	57.61	55.37
Bra030841.1-P	Field mustard	nucleus	53.07	54.76
Zm00001d043774_P001	Maize	cytosol	7.44	54.12
Zm00001d012531_P001	Maize	mitochondrion	11.33	53.44
CDY50018	Canola	vacuole	55.18	53.36
CDY51073	Canola	mitochondrion, nucleus	43.53	52.64
GSMUA_Achr4P09770_001	Banana	cytosol	38.19	51.75
GSMUA_Achr7P06190_001	Banana	cytosol	46.76	50.09
Solyc04g080690.1.1	Tomato	cytosol	22.65	49.12
GSMUA_Achr3P04130_001	Banana	nucleus	48.06	47.67
GSMUA_Achr5P04200_001	Banana	plastid	47.57	47.04
GSMUA_Achr3P11960_001	Banana	cytosol, plastid	46.28	46.89
KXG40069	Sorghum	nucleus	47.73	46.83
Os08t0341700-01	Rice	nucleus	48.22	46.78
Zm00001d014589_P001	Maize	cytosol	7.28	46.39
HORVU6Hr1G071770.19	Barley	cytosol	46.28	46.28
Os02t0721800-01	Rice	cytosol	45.63	46.08
TraesCS2B01G533900.1	Wheat	nucleus	46.93	46.03
TraesCS2D01G506400.1	Wheat	nucleus	47.09	45.97
TraesCS6A01G284800.1	Wheat	cytosol	46.12	45.97
TraesCS6D01G265200.1	Wheat	cytosol	45.95	45.88
TraesCS6B01G313500.1	Wheat	cytosol	45.95	45.88
KXG30865	Sorghum	cytosol	45.63	45.7
Zm00001d017876_P018	Maize	cytosol	45.47	45.54
Zm00001d051674_P037	Maize	cytosol	44.66	45.1
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	47.9	44.85
TraesCS7D01G238000.2	Wheat	cytosol	43.04	43.97
Os08t0497300-01	Rice	cytosol, plastid	42.56	43.54
OQU80990	Sorghum	cytosol	42.56	43.33
Solyc09g060090.2.1	Tomato	cytosol	41.26	43.0
EER96946	Sorghum	cytosol, nucleus, plastid	41.59	42.9
Zm00001d045670_P001	Maize	cytosol	12.95	42.55
Os09t0481100-01	Rice	nucleus	41.75	42.23
Zm00001d035770_P002	Maize	cytosol, endoplasmic reticulum	20.06	41.75
HORVU1Hr1G091860.1	Barley	cytosol	11.0	41.72
Zm00001d005995_P003	Maize	nucleus	40.29	41.57
Zm00001d050131_P002	Maize	cytosol	42.23	40.85
HORVU7Hr1G048880.11	Barley	mitochondrion	41.91	40.03
Zm00001d031316_P020	Maize	cytosol	41.75	40.0
Zm00001d008240_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	12.78	39.9
TraesCS7B01G135600.2	Wheat	plastid	43.04	39.88
Solyc01g109870.2.1	Tomato	cytosol	40.29	39.84
TraesCS7A01G240000.3	Wheat	endoplasmic reticulum, plastid	43.2	39.79
Solyc10g053970.1.1	Tomato	cytosol	39.97	39.65
Zm00001d045718_P001	Maize	cytosol	16.18	39.53
Solyc10g053900.1.1	Tomato	cytosol, plastid	35.76	38.84
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	35.6	38.33
Solyc11g040280.1.1	Tomato	cytosol	36.25	37.46
Zm00001d052840_P016	Maize	plastid	42.88	36.55
Zm00001d010393_P001	Maize	plastid	20.06	34.07
Zm00001d037983_P001	Maize	cytosol	12.46	32.63
Solyc08g078680.2.1	Tomato	cytosol	25.08	32.29
Bra038012.1-P	Field mustard	cytosol	54.85	32.04
Zm00001d047488_P001	Maize	nucleus	7.12	27.5
Solyc07g065700.2.1	Tomato	cytosol	7.61	25.54
Solyc11g012790.1.1	Tomato	cytosol	13.75	25.15
Zm00001d035370_P003	Maize	plastid	13.92	21.08
Zm00001d005778_P001	Maize	plastid	7.28	16.01

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	UniProt:K4CXA6	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF84	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc10g005740.1	EnsemblPlants:Solyc10g005740.1.1	UniParc:UPI000276C971	SEG:seg

Description

No Description!

Coordinates

chr10:-:594548..599358

Molecular Weight (calculated)

71570.9 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.597

Length

618 amino acids

Sequence
(BLAST)

001: MSGGSDAYYD DRRERKSDFE NSEDETRRFR IGAFRKKAIN ASNKFTRSLK KRGKKKVDYR FPSVLIEDVH DSKEENVVYE LHQKLLDRNL LPPIHDDYHT
101: LLRFLKARDF NIEKTIQMWQ EMLNWRKEYG TDTILEDFHF EELEEVLQYY PQGYHGVDRD GRPVYIERLG QAHPNKLMRI TTIDRYMKYH IQEFERALHE
201: KFPACSIAAK KRIYSTTTIL DVQGLGVKNF TRTAATLLAA MAKVDNNYFP ETLQRMFIVN AGPGFQKILW PAAQKFLDAK TIGKIQVLEP KSLGKLLEAI
301: DPSQLPDFLG GSCTCSVERR CLRSNKGPWS NPEIMKLLHD LEAKTMKQIS RISRDQRRID SSKQIRPLKG RINETSTAES VSDVHVPCSP IRRSSSSIPQ
401: LFQLDEARKS NSTPYCSCDE QFSTGELVDV IEHSLCCPEP RECNLTNLST NARTTSEGTL VIHWFETIQK KVLSRCMHCL ERKLVPFILK LSGLICGLFY
501: EYWRKQANAS RTSALEERQE SSSSAYGEVV HKSDEALPCM ERLHKLEMLF EEIKRKPAEI PAEKDQMIQQ SLERIKSVEV DLDKAKRVLH TAVVKQLEIA
601: ELLENLKQSS NHRRRLLC

Best Arabidopsis Sequence Match ( AT1G55690.5 )
(BLAST)

001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHRR RRLFC

Arabidopsis Description

SFH13Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Source:UniProtKB/Swiss-Prot;Acc:Q501H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.