Factsheet for GSMUA_Achr3P11960_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06190_001	Banana	cytosol	76.23	80.59
HORVU1Hr1G088100.1	Barley	cytosol	18.85	71.43
HORVU7Hr1G037200.1	Barley	nucleus	24.1	68.69
HORVU3Hr1G112740.3	Barley	nucleus	24.75	67.41
GSMUA_Achr4P09770_001	Banana	cytosol	49.02	65.57
HORVU7Hr1G040650.2	Barley	cytosol, nucleus, plastid	23.93	65.18
GSMUA_Achr3P28830_001	Banana	nucleus	27.7	63.77
Os08t0341700-01	Rice	nucleus	65.08	62.32
TraesCS2B01G533900.1	Wheat	nucleus	62.3	60.32
KXG40069	Sorghum	nucleus	62.13	60.16
TraesCS2D01G506400.1	Wheat	nucleus	62.13	59.87
GSMUA_Achr3P04130_001	Banana	nucleus	60.82	59.55
GSMUA_Achr5P04200_001	Banana	plastid	60.33	58.88
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	61.48	56.82
KRH45371	Soybean	cytosol	40.16	55.68
GSMUA_Achr9P01730_001	Banana	plastid	30.98	54.78
VIT_19s0015g01160.t01	Wine grape	cytosol	54.92	53.95
Zm00001d050131_P002	Maize	cytosol	54.92	52.43
KRH07662	Soybean	cytosol	52.79	52.02
KRH62508	Soybean	cytosol	52.62	51.77
KRH56402	Soybean	cytosol	52.3	51.45
Solyc07g066090.2.1	Tomato	nucleus	51.31	50.48
PGSC0003DMT400057292	Potato	nucleus	50.98	50.32
GSMUA_Achr1P12050_001	Banana	cytosol	50.33	49.04
CDY11957	Canola	cytosol	35.74	48.99
GSMUA_Achr2P09690_001	Banana	cytosol	49.67	48.4
CDY11954	Canola	cytosol	15.41	48.21
CDY42378	Canola	nucleus	50.16	47.59
AT1G55690.4	Thale cress	nucleus	48.69	47.52
GSMUA_Achr10P...	Banana	cytosol	43.28	47.31
CDY10540	Canola	cytosol, nucleus, plastid	49.67	47.12
GSMUA_Achr9P22020_001	Banana	cytosol	48.03	46.43
Solyc10g005740.1.1	Tomato	nucleus	46.89	46.28
Bra030841.1-P	Field mustard	nucleus	45.25	46.08
CDY50018	Canola	vacuole	47.87	45.7
GSMUA_Achr6P03210_001	Banana	cytosol	44.43	45.62
GSMUA_Achr5P23630_001	Banana	cytosol	44.59	45.18
CDY51073	Canola	mitochondrion, nucleus	37.21	44.42
PGSC0003DMT400022405	Potato	cytosol, nucleus	41.97	43.99
HORVU1Hr1G091860.1	Barley	cytosol	11.48	42.94
Bra002841.1-P	Field mustard	cytosol	36.39	42.45
AT5G56160.1	Thale cress	cytosol	39.67	41.94
CDY51966	Canola	cytosol	40.66	41.68
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	45.08	41.67
CDY17397	Canola	cytosol	40.49	41.51
GSMUA_AchrUn_...	Banana	mitochondrion	25.08	41.24
GSMUA_Achr6P06610_001	Banana	mitochondrion	29.18	40.92
CDY36780	Canola	plastid	37.38	40.0
GSMUA_Achr1P25320_001	Banana	cytosol	42.3	39.45
GSMUA_Achr3P28840_001	Banana	mitochondrion	20.82	34.51
GSMUA_Achr3P12050_001	Banana	cytosol	15.9	29.04
GSMUA_Achr7P06060_001	Banana	cytosol	15.41	28.23
GSMUA_Achr1P19200_001	Banana	cytosol	15.57	28.19
Bra038012.1-P	Field mustard	cytosol	47.87	27.6
Bra028944.1-P	Field mustard	plastid	31.48	27.59
GSMUA_Achr3P28070_001	Banana	cytosol	14.92	27.08
GSMUA_Achr4P13090_001	Banana	cytosol	13.77	25.0
GSMUA_Achr1P09480_001	Banana	cytosol	13.61	24.78
Bra002840.1-P	Field mustard	cytosol	0.16	1.3
CDY36781	Canola	extracellular	0.16	0.6

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	EnsemblPlantsGene:GSMUA_Achr3G11960_001	EnsemblPlants:GSMUA_Achr3P11960_001	EnsemblPlants:GSMUA_Achr3T11960_001	InterPro:IPR001251	InterPro:IPR036865
UniProt:M0SDW3	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324
PANTHER:PTHR23324:SF95	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000295D3CB
SEG:seg	:	:	:	:	:

Description

Putative Sec14 cytosolic factor [Source:GMGC_GENE;Acc:GSMUA_Achr3G11960_001]

Coordinates

chr3:-:8874677..8881510

Molecular Weight (calculated)

70599.3 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.613

Length

610 amino acids

Sequence
(BLAST)

001: MTGLEGLHAW EERKGKRSDV ESSEDERRRL TIGSLKKKAL NASSRFTHSL RKRGKRRSVH RTSSVSIEDV RDVEEERAVY AFRKELISRD LLPDKHDDYH
101: MMLRFLKARK FEHEKAVQMW ADMLHWRKEF GTDTILEDFN FEELEEVLQH YPQGYHGVDK EGRPVYIERL GKVEPNKLMH ITTVERYIKF HVQEFEKALH
201: EKFPACSIAA KRHIDSTTTI LDVHGVGLKN FGKTARDLLL KMQKIDGDYY PETLHQMFIV NAGHGFRLLW NTVKGFLDPK TTAKIHVLGT KYQSALLEII
301: DSSQLPDFLG GTCTCSVEGG CLKSNKGPWN DPNIMKLEYN AEADSLRHTR RMSGGDEAFV GSYFLKGRSS DTWTLESGSD VDDLVFKPVE HSRLAPVREE
401: IRARDSTAYY SCDEHFVVVD KAMDCVRRGE QSYEKTKDIK YEEQRSYGFS TSNQHDSLSM ASHPVTKEDT GEGIFQLFSR VLIASLVKIL LFFHVDGFRK
501: RKLSNIRTSD AQNLAVQHSS TVKNLEDHLG PCLERIKRLE MMFDELTKKP AEIPSEKEHM LLESWDRIKH VEFDLEKTKR VLHATVMKQL EFAESLDALQ
601: DLKLEKRMFC

Best Arabidopsis Sequence Match ( AT1G55690.5 )
(BLAST)

001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHRR RRLFC

Arabidopsis Description

SFH13Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Source:UniProtKB/Swiss-Prot;Acc:Q501H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.