CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G088100.1	Barley	cytosol	22.38	87.58
HORVU7Hr1G037200.1	Barley	nucleus	29.37	86.45
Os08t0341700-01	Rice	nucleus	86.51	85.56
Zm00001d050131_P002	Maize	cytosol	85.4	84.19
TraesCS2B01G533900.1	Wheat	nucleus	83.81	83.81
TraesCS2D01G506400.1	Wheat	nucleus	83.65	83.25
HORVU3Hr1G112740.3	Barley	nucleus	29.37	82.59
HORVU7Hr1G040650.2	Barley	cytosol, nucleus, plastid	28.73	80.8
GSMUA_Achr7P06190_001	Banana	cytosol	59.37	64.82
GSMUA_Achr3P11960_001	Banana	cytosol, plastid	60.16	62.13
OQU80990	Sorghum	cytosol	53.33	55.35
KXG30865	Sorghum	cytosol	53.49	54.62
VIT_19s0015g01160.t01	Wine grape	cytosol	53.65	54.43
KRH62508	Soybean	cytosol	52.7	53.55
EER96946	Sorghum	cytosol, nucleus, plastid	50.79	53.42
KRH45371	Soybean	cytosol	37.3	53.41
KRH56402	Soybean	cytosol	52.54	53.39
Solyc07g066090.2.1	Tomato	nucleus	50.95	51.77
PGSC0003DMT400057292	Potato	nucleus	50.32	51.29
CDY11954	Canola	cytosol	15.56	50.26
HORVU1Hr1G091860.1	Barley	cytosol	12.86	49.69
KRH07662	Soybean	cytosol	48.73	49.6
CDY11957	Canola	cytosol	34.6	48.99
AT1G55690.4	Thale cress	nucleus	48.41	48.8
Solyc10g005740.1.1	Tomato	nucleus	46.83	47.73
CDY42378	Canola	nucleus	48.57	47.59
CDY10540	Canola	cytosol, nucleus, plastid	48.57	47.59
KXG29407	Sorghum	cytosol, nucleus, plastid	46.03	46.33
Bra030841.1-P	Field mustard	nucleus	43.97	46.24
CDY50018	Canola	vacuole	46.51	45.85
KXG22454	Sorghum	cytosol	44.92	45.72
KXG33199	Sorghum	cytosol	43.33	45.12
PGSC0003DMT400022405	Potato	cytosol, nucleus	41.43	44.85
CDY51073	Canola	mitochondrion, nucleus	36.03	44.42
CDY51966	Canola	cytosol	40.48	42.86
CDY17397	Canola	cytosol	40.32	42.69
Bra002841.1-P	Field mustard	cytosol	35.4	42.64
AT5G56160.1	Thale cress	cytosol	39.05	42.63
OQU85018	Sorghum	nucleus	40.79	41.92
OQU84321	Sorghum	cytosol	36.35	40.6
CDY36780	Canola	plastid	36.51	40.35
OQU88968	Sorghum	cytosol	24.76	37.96
Bra028944.1-P	Field mustard	plastid	30.79	27.87
Bra038012.1-P	Field mustard	cytosol	46.35	27.6
EER96447	Sorghum	cytosol	13.97	26.27
EES04709	Sorghum	cytosol	13.49	25.99
EER90026	Sorghum	cytosol	13.17	25.15
Bra002840.1-P	Field mustard	cytosol	0.16	1.3
CDY36781	Canola	extracellular	0.16	0.6

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A1B6QQ76	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	InterPro:IPR001251	InterPro:IPR036865	EnsemblPlants:KXG40069
ProteinID:KXG40069	ProteinID:KXG40069.1	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PANTHER:PTHR23324	PANTHER:PTHR23324:SF95	SMART:SM00516	SMART:SM01100	EnsemblPlantsGene:SORBI_3001G486300	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI00081AC2E0	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:75691267..75695786

Molecular Weight (calculated)

72238.4 Da

IEP (calculated)

9.102

GRAVY (calculated)

-0.592

Length

630 amino acids

Sequence
(BLAST)

001: MSVRRRSASM EGLLTLDDRK ERRSDVDNSE DERRRLSIGS LKKKALNASN KLTHSLKKRG KRKVEHRASS FTIEDVRDEQ EERAVFTFQQ ELLNRNLLPD
101: KHNDYHLLLR FLKARKFDTE KAIHMWAEML QWRKEFGADT ILEDFSFEEL DDVLCYYPQG YHGVDRQGRP VYIERLGKVE PNKLMHITTV DRYMKYHVQE
201: FERAFRDKFP ACSIAAKRHI DSTTTILDVD GVGLKNFSKT ARDMLSRMQK IDSDYYPETL HQMFVVNAGS GFKLLWNSVK GFLDPKTASK IHVLGTKFQN
301: KLLEVIDASQ LPEFLGGTCT CATVGGCLRS NKGPWNDPDI MKLAHNKEAK FTRHTRRLSE IEQRRSSFAR LHLLKGRNSD TSTVESGSEI EDLGSPMMRS
401: TVGCSRLAPV HEEMQMRARD SAAYYSCDDH FVVVDKTVDY GRGGSMSHKT SASEVKTQVR PLDASTAAHM AGPSSNRRGT VVPKEVSDEG AFHRFIRLLL
501: AFIVKVFAFF HIVYSQQETR VNNPLPLAEP EPISDEHPAV ETFNVDHISP VIERLQRLEG KVDELGSKPP AIPMEKERSL LDSWNRIKCI ESDLERTKKV
601: LQATVMKQLE IAESLEEVIR SNLRRRRFCA

Best Arabidopsis Sequence Match ( AT1G55690.5 )
(BLAST)

001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHRR RRLFC

Arabidopsis Description

SFH13Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Source:UniProtKB/Swiss-Prot;Acc:Q501H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.