Factsheet for Bra038012.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50018	Canola	vacuole	56.24	93.11
AT1G55690.4	Thale cress	nucleus	47.45	80.32
Bra030841.1-P	Field mustard	nucleus	44.9	79.3
Zm00001d039981_P001	Maize	cytosol	8.41	72.36
Zm00001d031251_P001	Maize	cytosol, mitochondrion	8.32	68.22
HORVU1Hr1G088100.1	Barley	cytosol	10.21	67.08
VIT_19s0015g01160.t01	Wine grape	cytosol	37.15	63.28
KRH45371	Soybean	cytosol	25.61	61.59
Zm00001d012531_P001	Maize	mitochondrion	7.56	61.07
HORVU7Hr1G037200.1	Barley	nucleus	12.0	59.35
Solyc07g066090.2.1	Tomato	nucleus	34.4	58.71
KRH56402	Soybean	cytosol	34.31	58.55
PGSC0003DMT400057292	Potato	nucleus	34.12	58.41
KRH62508	Soybean	cytosol	34.12	58.23
HORVU3Hr1G112740.3	Barley	nucleus	12.29	58.04
KRH07662	Soybean	cytosol	33.74	57.67
HORVU7Hr1G040650.2	Barley	cytosol, nucleus, plastid	12.1	57.14
Solyc10g005740.1.1	Tomato	nucleus	32.04	54.85
Zm00001d043774_P001	Maize	cytosol	4.35	54.12
GSMUA_Achr4P09770_001	Banana	cytosol	22.87	53.07
Bra030295.1-P	Field mustard	cytosol	13.99	52.3
PGSC0003DMT400022405	Potato	cytosol, nucleus	28.54	51.89
Bra002841.1-P	Field mustard	cytosol	24.95	50.48
GSMUA_Achr7P06190_001	Banana	cytosol	26.84	49.22
Zm00001d014589_P001	Maize	cytosol	4.44	48.45
GSMUA_Achr3P04130_001	Banana	nucleus	28.45	48.31
GSMUA_Achr3P11960_001	Banana	cytosol, plastid	27.6	47.87
GSMUA_Achr5P04200_001	Banana	plastid	27.88	47.2
Os02t0721800-01	Rice	cytosol	27.03	46.73
TraesCS7D01G238000.2	Wheat	cytosol	26.56	46.45
KXG40069	Sorghum	nucleus	27.6	46.35
OQU80990	Sorghum	cytosol	26.56	46.29
Os08t0341700-01	Rice	nucleus	27.69	46.0
TraesCS2B01G533900.1	Wheat	nucleus	27.32	45.87
HORVU6Hr1G071770.19	Barley	cytosol	26.75	45.79
TraesCS6D01G265200.1	Wheat	cytosol	26.75	45.72
TraesCS6A01G284800.1	Wheat	cytosol	26.75	45.65
TraesCS6B01G313500.1	Wheat	cytosol	26.65	45.56
TraesCS2D01G506400.1	Wheat	nucleus	27.22	45.5
Zm00001d005995_P003	Maize	nucleus	25.61	45.24
KXG30865	Sorghum	cytosol	26.37	45.22
Zm00001d017876_P018	Maize	cytosol	26.37	45.22
Os08t0497300-01	Rice	cytosol, plastid	25.8	45.2
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	28.17	45.15
Zm00001d051674_P037	Maize	cytosol	25.99	44.93
EER96946	Sorghum	cytosol, nucleus, plastid	25.24	44.57
Os09t0481100-01	Rice	nucleus	25.61	44.35
Zm00001d045670_P001	Maize	cytosol	7.84	44.15
Zm00001d035770_P002	Maize	cytosol, endoplasmic reticulum	12.19	43.43
HORVU7Hr1G048880.11	Barley	mitochondrion	26.37	43.12
Zm00001d031316_P020	Maize	cytosol	25.9	42.48
Bra010699.1-P	Field mustard	cytosol	21.55	42.46
TraesCS7A01G240000.3	Wheat	endoplasmic reticulum, plastid	26.75	42.18
TraesCS7B01G135600.2	Wheat	plastid	26.56	42.13
Zm00001d050131_P002	Maize	cytosol	24.48	40.53
HORVU1Hr1G091860.1	Barley	cytosol	6.24	40.49
Bra010700.1-P	Field mustard	cytosol	23.54	40.29
Bra034638.1-P	Field mustard	cytosol	20.42	39.71
Zm00001d045718_P001	Maize	cytosol	9.45	39.53
Zm00001d008240_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	7.37	39.39
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	18.15	39.34
Bra031196.1-P	Field mustard	cytosol	23.25	38.92
Bra017663.1-P	Field mustard	cytosol, plastid	16.54	38.38
Zm00001d052840_P016	Maize	plastid	26.28	38.34
Bra024938.1-P	Field mustard	cytosol	14.46	38.06
Bra028944.1-P	Field mustard	plastid	24.76	37.64
Bra015089.1-P	Field mustard	cytosol	18.81	37.2
Bra011544.1-P	Field mustard	cytosol, plastid	17.39	37.17
Bra025754.1-P	Field mustard	nucleus	21.36	37.05
Bra003757.1-P	Field mustard	cytosol	22.02	36.87
Zm00001d037983_P001	Maize	cytosol	7.66	34.32
Zm00001d010393_P001	Maize	plastid	11.63	33.79
Bra002840.1-P	Field mustard	cytosol	1.89	25.97
Bra038021.1-P	Field mustard	cytosol	7.75	25.08
Zm00001d047488_P001	Maize	nucleus	3.78	25.0
Bra017468.1-P	Field mustard	cytosol	7.84	24.92
Bra030831.1-P	Field mustard	cytosol	7.66	24.92
Bra022153.1-P	Field mustard	cytosol	7.66	24.47
Bra024920.1-P	Field mustard	cytosol	7.47	23.65
Zm00001d035370_P003	Maize	plastid	6.9	17.89
Bra013077.1-P	Field mustard	cytosol, plastid	23.63	17.14
Zm00001d005778_P001	Maize	plastid	3.69	13.88

Protein Annotations

Gene3D:1.10.8.20	Gene3D:2.130.10.10	Gene3D:3.40.525.10	MapMan:35.1	EnsemblPlantsGene:Bra038012	EnsemblPlants:Bra038012.1
EnsemblPlants:Bra038012.1-P	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001251	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:IPR036865	UniProt:M4FA98	PFAM:PF00400	PFAM:PF00650	PFAM:PF03765
PFscan:PS50082	PFscan:PS50191	PFscan:PS50294	PANTHER:PTHR23324	PANTHER:PTHR23324:SF84	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF50998	SUPFAM:SSF52087
UniParc:UPI000253EE27	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	SEG:seg	:

Description

AT1G55680 (E=9e-231) | WD-40 repeat family protein

Coordinates

chrA06:+:127832..133958

Molecular Weight (calculated)

120802.0 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.531

Length

1058 amino acids

Sequence
(BLAST)

0001: MSSASTRSLL PSLFKLTDMS GIEEYGSLDF DISEEDERRR SKIGNLKKKA IHASTKFTHS LKKRGKRKID YRFPPVTSIE DVRDEKEETL VLEFRRHLLH
0101: RDLLPPRHDD YHTLLRFLKA RDLNIEKTIQ MWEEMLSWRK EYGTDTILED FEFEELEEVL QYYPQGYHGV DKEGRPVYIE RLGKAHPSKL MRITTIDRYL
0201: KYHVQEFERA LLEKFPACSI AAKRRIYSST TILDVLGLGM KNFTSAGASL VAAMAKIDNS YYPETLHRMY IVNAGTGFKK MLWPAAQKFL DAKTIAKIHV
0301: LEPKSLSKLH EVIDSSQLPD FLGGSCSCFG DGGCLRSNKG PWNDPETMKL IYRGESSLFR QITRKLSDPQ NSSSYISIHP SKAMQAESSA AESIFCSDVP
0401: TGRMCSASAH VNSAYEEART SDVNGYYSCD DNFAIPTNRR GQERQSHYQM LELDLSLKGT LDSIKPESLA KRILSLLLKL AAVFRYIPFE LSRRKHTITP
0501: SSPTEDESRS TLTAIPRETT MKDRIGPCLE RIQKLERKYE EIRNKPVEIP VEKERMLMDS LDRIKSVEFD LEKTKRALHA TVMKQMEITE MLESIRESQL
0601: HVPLYNPTKI KMSNFQPEDP APYMNHVGDQ MQEVHDGLDD DFHGDAWDSD VDEFDYSNNK IGDTSAAQAR KGKDIQGIPW GRLSITISRD QYRQTRLEQY
0701: INYENVPNSG DSSAKDCMVT QKGSLFYDFW RNSRSIKSSI IHFQLRNLVW ATSKHDVYLM SNFLVNHYST LKCRKHEVLN LQGHVSPSEK HPGSLLEGFT
0801: KIQVSSLAVK DKFLVAGGFQ GEIICKHLDR PGVSFCWRTT YDDNAITNAI EIYNKPSGAL HFIASNNDCG VRDFDMERYQ LVNHFHFPWP VNHTSLSPDG
0901: KLLTIVGDNP EGLLVDPNTG KTLGTVAGHL DFSFASAWHP DGLTFSTGNQ DKTCRVWDVR NLSKSVAVLR GNLGAIRSIR YTSDGKYMAM AEPADFVHVY
1001: DVSKGYETEQ EIDFFGEISG ISFSPDTEAL FIGVWDRTYG SLLEYGRHHN YSYLDSYL

Best Arabidopsis Sequence Match ( AT1G55690.3 )
(BLAST)

001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHVR T

Arabidopsis Description

SFH13Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Source:UniProtKB/Swiss-Prot;Acc:Q501H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.