Factsheet for Zm00001d052840_P016

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045718_P001	Maize	cytosol	33.1	94.86
Zm00001d039981_P001	Maize	cytosol	16.0	94.31
OQU80990	Sorghum	cytosol	74.9	89.46
Zm00001d031316_P020	Maize	cytosol	75.59	84.96
Zm00001d014589_P001	Maize	cytosol	11.31	84.54
Os08t0497300-01	Rice	cytosol, plastid	64.83	77.81
TraesCS7D01G238000.2	Wheat	cytosol	64.83	77.69
Zm00001d010393_P001	Maize	plastid	38.48	76.65
Zm00001d031251_P001	Maize	cytosol, mitochondrion	13.1	73.64
HORVU7Hr1G048880.11	Barley	mitochondrion	65.1	72.95
TraesCS7B01G135600.2	Wheat	plastid	66.07	71.81
TraesCS7A01G240000.3	Wheat	endoplasmic reticulum, plastid	66.34	71.68
Zm00001d005995_P003	Maize	nucleus	56.0	67.78
Zm00001d012531_P001	Maize	mitochondrion	11.86	65.65
Zm00001d008240_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	17.79	65.15
Zm00001d045670_P001	Maize	cytosol	16.83	64.89
Zm00001d043774_P001	Maize	cytosol	6.9	58.82
Zm00001d035770_P002	Maize	cytosol, endoplasmic reticulum	23.45	57.24
GSMUA_Achr4P09770_001	Banana	cytosol	35.45	56.36
Zm00001d017876_P018	Maize	cytosol	44.97	52.84
Zm00001d051674_P037	Maize	cytosol	44.0	52.12
GSMUA_Achr3P04130_001	Banana	nucleus	43.86	51.04
GSMUA_Achr5P04200_001	Banana	plastid	44.0	51.04
Zm00001d047488_P001	Maize	nucleus	11.17	50.62
KRH45371	Soybean	cytosol	30.07	49.55
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	44.97	49.39
VIT_19s0015g01160.t01	Wine grape	cytosol	41.1	47.99
KRH62508	Soybean	cytosol	40.41	47.26
Zm00001d019582_P001	Maize	cytosol	20.83	47.19
KRH56402	Soybean	cytosol	40.28	47.1
Zm00001d050131_P002	Maize	cytosol	41.24	46.79
Zm00001d037983_P001	Maize	cytosol	15.17	46.61
CDY11957	Canola	cytosol	28.41	46.29
Solyc07g066090.2.1	Tomato	nucleus	39.59	46.29
KRH07662	Soybean	cytosol	39.45	46.2
PGSC0003DMT400057292	Potato	nucleus	39.17	45.95
CDY10540	Canola	cytosol, nucleus, plastid	40.14	45.26
CDY11954	Canola	cytosol	12.14	45.13
AT1G55690.4	Thale cress	nucleus	38.9	45.12
CDY42378	Canola	nucleus	40.0	45.1
Bra030841.1-P	Field mustard	nucleus	36.28	43.91
CDY50018	Canola	vacuole	38.62	43.82
Solyc10g005740.1.1	Tomato	nucleus	36.55	42.88
Zm00001d015174_P005	Maize	cytosol	38.07	42.2
Zm00001d053994_P008	Maize	cytosol, mitochondrion	38.21	41.59
CDY51073	Canola	mitochondrion, nucleus	29.24	41.49
AT5G56160.1	Thale cress	cytosol	32.28	40.55
Zm00001d038880_P001	Maize	cytosol	34.48	40.45
PGSC0003DMT400022405	Potato	cytosol, nucleus	32.41	40.38
Bra002841.1-P	Field mustard	cytosol	29.1	40.34
CDY51966	Canola	cytosol	33.1	40.34
Zm00001d009439_P004	Maize	cytosol	34.21	40.13
CDY17397	Canola	cytosol	32.83	40.0
Zm00001d043733_P002	Maize	mitochondrion	29.93	39.53
Zm00001d011663_P003	Maize	cytosol	33.24	39.25
Zm00001d016601_P006	Maize	cytosol	32.69	39.17
CDY36780	Canola	plastid	29.66	37.72
Zm00001d015175_P002	Maize	plastid	30.9	34.73
Zm00001d035370_P003	Maize	plastid	17.79	31.62
Bra038012.1-P	Field mustard	cytosol	38.34	26.28
Bra028944.1-P	Field mustard	plastid	24.97	26.01
Zm00001d015785_P001	Maize	extracellular	11.31	25.08
Zm00001d005778_P001	Maize	plastid	9.1	23.49
Zm00001d053333_P001	Maize	cytosol	3.86	22.95
Zm00001d024390_P001	Maize	cytosol	3.86	21.88
Zm00001d015625_P001	Maize	cytosol	3.86	21.54
Zm00001d046538_P003	Maize	cytosol	11.45	21.12
Zm00001d005118_P002	Maize	cytosol	11.17	20.56
Zm00001d053648_P005	Maize	cytosol, endoplasmic reticulum, plastid	9.38	19.71
Zm00001d019834_P003	Maize	cytosol, extracellular, plastid	2.62	18.63
Zm00001d050144_P001	Maize	cytosol	4.14	17.34
Zm00001d051318_P001	Maize	cytosol	3.86	14.74
Zm00001d023995_P002	Maize	extracellular, golgi, plastid	4.28	13.14
Zm00001d020031_P001	Maize	cytosol	2.21	10.19
Bra002840.1-P	Field mustard	cytosol	0.28	2.6
CDY36781	Canola	extracellular	0.14	0.6

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:100279612	Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A1D6QKC3	ProteinID:AQK58163.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF65	SMART:SM00516
SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000843AD23	EnsemblPlantsGene:Zm00001d052840	EnsemblPlants:Zm00001d052840_P016
EnsemblPlants:Zm00001d052840_T016	SEG:seg	:	:	:	:

Description

Phosphatidylinositol/phosphatidylcholine transfer protein SFH13

Coordinates

chr4:+:202386225..202394624

Molecular Weight (calculated)

82122.9 Da

IEP (calculated)

8.007

GRAVY (calculated)

-0.493

Length

725 amino acids

Sequence
(BLAST)

001: MQVPLLPQGL AVAGSCNFFF GNEIWSLASF HPLFLPAQIC PCRRTRTPAR QLLFFNGCCS ELIVRGISFL PQTVAVEDWV RERDVSAGLS RNPEFTSVAR
101: MSVSHAQDIE ISLCDGNSED ERRRRKIGSL RRKAIHALKK RGRRRVDSRF PPPAISIEDV RDAEEERAVA SFRERLAAHG LLPEKHDDYH MMLRFLKARK
201: FEAEKAMQMW SEMLKWRKEF GTDTILEDFD FEELDDVLRY YPQGYHGVDR QGRPVYIERL GKVDPNNLMQ ITSVDRYIKY HVQEFERAFR ERFPACTLAA
301: KRHIDSTTTI LDVQGVGFKN FSRTARELVN RMQKIDSDYY PETLHQMFVV NAGSGFKWIW NSVKGFLDPK TSSKIHVLGS NYQSRLLEVI DSSELPEFLG
401: GSCTCSDKGG CLGSNKGPWN DPYILKLIHN LEAGCMRETT KPVSEGGERS SSSFRLEQMK WQGMLSDTSN AESGSDVDDF GPSFVHKVSG YGCLTPVREE
501: VKGTDCATYL SCDDQSHPDM VPEFYHGVQR TTEMVQKQMA DFRQYSTNRR PRELGNGSLN ANGTAAAQRG WEDVAKLVVT ALIKLFSFIR LFLSRAAESR
601: LEKVRRTAPP PAAEKPKPPR AVSEEEVRAC LQRLDSLESL CGHLATRPAQ IPEDKERVLL SSFERIRSVE ADLERTKRVL NATVAKQKAL VEEVALESVQ
701: ELPRAKVHNS SPIQCPPPSS NGLLE

Best Arabidopsis Sequence Match ( AT2G21520.1 )
(BLAST)

001: MSGPLDRFAR PCFEGFLSSD EKKERKSDFE NSEDERRTRI GSLKKKAINA STKFKHSLKK KSGRRKSDGR VSSVSIEDVR DVEELQAVDA FRQSLLMDEL
101: LPDRHDDYHM MLRFLKARKF DVEKAKQMWA DMIQWRKEFG TDTIIQDFDF EEINEVLKHY PQCYHGVDKE GRPIYIERLG KVDPNRLMQV TSMDRYVRYH
201: VKEFERSFMI KFPSCTISAK RHIDSSTTIL DVQGVGLKNF NKSARDLITR LQKIDGDNYP ETLHQMFIIN AGPGFRLLWN TVKSFLDPKT SAKIHVLGYK
301: YLSKLLEVID VNELPEFLGG ACTCADQGGC MLSDKGPWKN PEIVKMVLHG GAHRARQVVK VLNSEGKVIA YAKPSYTWIK GSDTSTAESG SDAEDIGSPK
401: AIKSFSHLRL TPVREEAKIA GETSLAGSFP GYDEYVPMVD KAVDATWKVK PAIQRVASRG ALMSPTVPKD HEGIKARVLV MFMAFLMAVF TFFRTVTKKL
501: PATTTSSPAE TQGNAIELGS NGEGVKEECR PPSPVPDLTE TDLLNCVTKK LTELEGKIGT LQSKPNEMPY EKEELLNAAV CRVDALEAEL IATKKALYEA
601: LMRQEELLAY IDRQEEAQFQ KMKKKKKKHL FCF

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:B3H588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.