Factsheet for PGSC0003DMT400022405

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005740.1.1	Tomato	nucleus	90.55	85.28
Zm00001d039981_P001	Maize	cytosol	15.46	73.17
HORVU1Hr1G088100.1	Barley	cytosol	18.38	66.46
Zm00001d031251_P001	Maize	cytosol, mitochondrion	14.43	65.12
PGSC0003DMT400057292	Potato	nucleus	68.56	64.56
HORVU7Hr1G037200.1	Barley	nucleus	21.82	59.35
HORVU7Hr1G040650.2	Barley	cytosol, nucleus, plastid	22.34	58.04
HORVU3Hr1G112740.3	Barley	nucleus	21.82	56.7
VIT_19s0015g01160.t01	Wine grape	cytosol	59.97	56.2
Zm00001d012531_P001	Maize	mitochondrion	12.2	54.2
KRH62508	Soybean	cytosol	56.53	53.06
Zm00001d043774_P001	Maize	cytosol	7.73	52.94
KRH56402	Soybean	cytosol	55.84	52.42
KRH45371	Soybean	cytosol	39.18	51.82
Bra030841.1-P	Field mustard	nucleus	53.26	51.75
AT1G55690.4	Thale cress	nucleus	53.95	50.24
CDY51073	Canola	mitochondrion, nucleus	43.81	49.9
KRH07662	Soybean	cytosol	52.75	49.6
CDY42378	Canola	nucleus	53.61	48.52
CDY10540	Canola	cytosol, nucleus, plastid	53.44	48.37
CDY50018	Canola	vacuole	51.03	46.48
GSMUA_Achr4P09770_001	Banana	cytosol	35.22	44.96
GSMUA_Achr7P06190_001	Banana	cytosol	44.33	44.71
GSMUA_Achr5P04200_001	Banana	plastid	46.22	43.04
GSMUA_Achr3P04130_001	Banana	nucleus	46.05	43.02
GSMUA_Achr3P11960_001	Banana	cytosol, plastid	43.99	41.97
Os08t0341700-01	Rice	nucleus	45.53	41.6
KXG40069	Sorghum	nucleus	44.85	41.43
HORVU6Hr1G071770.19	Barley	cytosol	43.99	41.42
TraesCS6A01G284800.1	Wheat	cytosol	43.99	41.29
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	46.74	41.21
TraesCS6D01G265200.1	Wheat	cytosol	43.81	41.2
TraesCS6B01G313500.1	Wheat	cytosol	43.81	41.2
TraesCS2B01G533900.1	Wheat	nucleus	44.5	41.11
TraesCS2D01G506400.1	Wheat	nucleus	44.5	40.92
Os02t0721800-01	Rice	cytosol	42.96	40.85
Zm00001d051674_P037	Maize	cytosol	42.61	40.52
Zm00001d017876_P018	Maize	cytosol	42.96	40.52
KXG30865	Sorghum	cytosol	42.96	40.52
Os08t0497300-01	Rice	cytosol, plastid	41.07	39.57
TraesCS7D01G238000.2	Wheat	cytosol	40.72	39.17
OQU80990	Sorghum	cytosol	40.21	38.55
EER96946	Sorghum	cytosol, nucleus, plastid	39.35	38.23
HORVU1Hr1G091860.1	Barley	cytosol	10.65	38.04
PGSC0003DMT400009598	Potato	cytosol	22.68	37.61
Os09t0481100-01	Rice	nucleus	39.18	37.32
PGSC0003DMT400045517	Potato	cytosol	37.97	37.27
Zm00001d050131_P002	Maize	cytosol	40.89	37.25
Zm00001d005995_P003	Maize	nucleus	37.63	36.56
HORVU7Hr1G048880.11	Barley	mitochondrion	40.03	36.01
PGSC0003DMT400001942	Potato	cytosol	38.49	35.84
Zm00001d031316_P020	Maize	cytosol	39.52	35.66
TraesCS7B01G135600.2	Wheat	plastid	40.72	35.53
TraesCS7A01G240000.3	Wheat	endoplasmic reticulum, plastid	40.89	35.47
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	34.54	35.02
PGSC0003DMT400043532	Potato	cytosol	33.51	35.01
PGSC0003DMT400043545	Potato	cytosol	37.46	33.9
PGSC0003DMT400021690	Potato	nucleus	34.71	33.44
Zm00001d052840_P016	Maize	plastid	40.38	32.41
Zm00001d035770_P002	Maize	cytosol, endoplasmic reticulum	16.32	31.99
Zm00001d045670_P001	Maize	cytosol	10.31	31.91
Bra038012.1-P	Field mustard	cytosol	51.89	28.54
Zm00001d045718_P001	Maize	cytosol	12.37	28.46
Zm00001d037983_P001	Maize	cytosol	10.48	25.85
Zm00001d010393_P001	Maize	plastid	16.15	25.82
Zm00001d008240_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	8.59	25.25
PGSC0003DMT400057025	Potato	cytosol	10.82	18.69
PGSC0003DMT400034789	Potato	cytosol	10.82	18.64
Zm00001d014589_P001	Maize	cytosol	2.58	15.46
Zm00001d047488_P001	Maize	nucleus	3.78	13.75
Zm00001d035370_P003	Maize	plastid	9.62	13.73
Zm00001d005778_P001	Maize	plastid	6.36	13.17

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	UniProt:M1AGN5	PFAM:PF00650	PFAM:PF03765
EnsemblPlantsGene:PGSC0003DMG400008688	PGSC:PGSC0003DMG400008688	EnsemblPlants:PGSC0003DMT400022405	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF84
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002950C0A	SEG:seg

Description

Transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400008688]

Coordinates

chr10:-:808273..813052

Molecular Weight (calculated)

67364.8 Da

IEP (calculated)

8.252

GRAVY (calculated)

-0.537

Length

582 amino acids

Sequence
(BLAST)

001: YDDRRERKSD FENSEDETRR FRIGAFRKKA INASNKFTRS LKKRGKKKVD YRFPSVLIED VHDAKEENVV YELHQQLLDR NLLPPIHDDY HTLLRFLKAR
101: AFNIEKTIQM WQEMLNWRKE YGTDTILEDF HFEELEEVLQ YYPQGYHGVD RDGRPVYIER LGQAHPNKLM RITTIDRYMK YHVQEFERAL HEKFPACSIA
201: AKKRIYSTTT ILDVQGLGVK NFTRTAATLL AAMAKVDNNY FPETLQQMFI VNAGPGFQKI LWPAAQKFLD AKTIGKIQLV HDLEAKTVKP ISGISRDQRR
301: IDSSKQIRPL KGRINETSTA ESVSDVHYPC SPIRRSSSSI PQLSLLDEEA RESNSTPYCS CDEQFSTGEL VDINKHVSLC CPEPPECNLT NLSTNAQPTS
401: EGTLVIHWFE TIQKKVLSGC MQCLERKLVP FILKLSGLIR GVFFEYWRKQ ANASRSSALE ERQESSSSAY GEVVHKSDDA LPCMERLHKL EMLFEEIKRK
501: PAEIPAEKDQ MIQQSMERIK SVEVDLDKTK RVLHTAVVKQ LEIAELLENL KQSSNHVSRF PVFFIFMLRG EGYMIGLSIV ER

Best Arabidopsis Sequence Match ( AT1G55690.1 )
(BLAST)

001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHRR RRLFC

Arabidopsis Description

SFH13Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Source:UniProtKB/Swiss-Prot;Acc:Q501H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.