Factsheet for PGSC0003DMT400001903

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT4G36490.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	98.43	98.43
PGSC0003DMT400043532	Potato	cytosol	72.82	75.04
PGSC0003DMT400021690	Potato	nucleus	73.87	70.2
KRH76738	Soybean	plastid	55.23	65.9
KRH28724	Soybean	plastid	54.88	65.22
KRH24439	Soybean	plastid	36.59	64.02
KRH29420	Soybean	cytosol, nucleus, plastid	61.85	63.06
AT4G36490.1	Thale cress	plastid	58.88	62.25
KRH60806	Soybean	cytosol	60.63	60.84
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	58.01	60.77
KRH51503	Soybean	cytosol	60.63	60.73
KRH69861	Soybean	plastid	58.71	60.72
KRH08168	Soybean	plastid	58.71	60.72
CDY15887	Canola	cytosol	58.01	60.66
CDX99586	Canola	cytosol	58.01	60.55
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	50.52	59.43
AT2G18180.1	Thale cress	plastid	56.97	58.6
CDX75444	Canola	cytosol	54.36	58.43
CDY12126	Canola	cytosol	54.36	58.32
AT4G34580.2	Thale cress	cytosol	56.27	58.3
CDX69071	Canola	cytosol	54.01	58.05
VIT_03s0038g04480.t01	Wine grape	cytosol	62.37	57.74
Bra010699.1-P	Field mustard	cytosol	54.01	57.73
CDX90317	Canola	cytosol	53.83	57.54
Bra034638.1-P	Field mustard	cytosol	54.53	57.54
AT4G39180.1	Thale cress	cytosol	54.7	56.68
CDX89709	Canola	cytosol, mitochondrion	44.77	56.48
Bra011544.1-P	Field mustard	cytosol, plastid	48.26	55.96
GSMUA_Achr5P23630_001	Banana	cytosol	58.54	55.81
GSMUA_Achr6P03210_001	Banana	cytosol	57.49	55.56
CDY17469	Canola	cytosol	54.88	55.17
CDY45318	Canola	cytosol, plastid	47.91	55.0
AT2G16380.1	Thale cress	cytosol	51.74	54.3
Bra017663.1-P	Field mustard	cytosol, plastid	42.51	53.51
CDX76291	Canola	cytosol	55.05	53.38
PGSC0003DMT400009598	Potato	cytosol	32.4	52.99
Os10t0122600-01	Rice	cytosol, nucleus, plastid	54.53	52.34
Os02t0440900-00	Rice	cytosol	54.18	52.01
OQU84321	Sorghum	cytosol	51.05	51.95
TraesCS2D01G335700.2	Wheat	nucleus	53.14	51.61
TraesCS2A01G327200.2	Wheat	nucleus	53.14	51.61
TraesCS2B01G354800.2	Wheat	nucleus	52.96	51.44
CDX69225	Canola	mitochondrion	54.36	51.4
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	59.06	51.36
PGSC0003DMT400001942	Potato	cytosol	55.92	51.36
HORVU2Hr1G082530.1	Barley	cytosol	51.74	51.3
OQU85018	Sorghum	nucleus	54.18	50.73
Zm00001d016601_P006	Maize	cytosol	53.14	50.41
PGSC0003DMT400043545	Potato	cytosol	55.75	49.77
Os02t0133200-01	Rice	plasma membrane	52.44	47.63
TraesCS6B01G125700.1	Wheat	plastid	50.87	47.48
TraesCS6A01G097200.1	Wheat	plastid	50.7	47.47
TraesCS6D01G085200.1	Wheat	plastid	50.52	47.15
HORVU6Hr1G017580.5	Barley	plastid	51.05	46.66
Zm00001d015175_P002	Maize	plastid	51.92	46.2
PGSC0003DMT400045517	Potato	cytosol	41.29	39.97
PGSC0003DMT400057292	Potato	nucleus	39.55	36.73
PGSC0003DMT400022405	Potato	cytosol, nucleus	35.02	34.54
PGSC0003DMT400057025	Potato	cytosol	14.81	25.22
PGSC0003DMT400034789	Potato	cytosol	14.29	24.26
CDY02262	Canola	cytosol, plastid	50.7	20.19
Bra013077.1-P	Field mustard	cytosol, plastid	50.7	19.95

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:102593879	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	UniProt:M0ZJA2
PFAM:PF00650	PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400000719	PGSC:PGSC0003DMG400000719	EnsemblPlants:PGSC0003DMT400001903	PRINTS:PR00180
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002966613	RefSeq:XP_006365127.1	RefSeq:XP_006365128.1	SEG:seg	:

Description

Sec14 cytosolic factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000719]

Coordinates

chr1:+:86156827..86160116

Molecular Weight (calculated)

65531.0 Da

IEP (calculated)

8.880

GRAVY (calculated)

-0.571

Length

574 amino acids

Sequence
(BLAST)

001: MSEYKSGPLE RPVRPSLEKF DMDAEDERKT RLGSIKKAAI NASTKFRNSL TKRGRRNSRV MSVLVLEDEH DAEELKAVDA FRQALILEEL LPAKHDDYHL
101: MLRFLKARKF DIEKTKQMWS DMLQWRREFG ADTITEDFDF KEKEEVLKYY PQGHHGVDKE GRPVYIERIG QVDSVKLLQA TTMDRYLKYH VQEFERTINE
201: KMPACSLAAK RHIDTSTTIL DVQGVGLKNF NKSARDLIQR LQAIDGNNYP ESLCRMYIIN AGSGFRLLWN SVKSFLDPKT TQKIHVLGNK YHSKLLEIID
301: ASELPEFLGG TCTCADKGGC MVSDKGPWND PEIMRMVRNG EHKCSHKIVI SIDEKTIPED DNANTKKSTS FRKETDSSKV QRDNGQLSPV REEFDIPIVD
401: KAVYATWPKQ VKAGNLANSK DFFPVHDACK SSEGFGNPVF SGVMTLVMGI VTLVRMTKNM PRKLTDATLL AGSLYSADMI KEETHGHVIS TKDYISMMKR
501: MEELEDKVIT LSQKPSSMPP EKENMLNAAI NRVGTLEEEL LATKKALDEA LVRQQELLSV LEKKKKKKKK FFVF

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.