Factsheet for TraesCS2D01G335700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G36490.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G36490.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G327200.2	Wheat	nucleus	98.82	98.82
TraesCS2B01G354800.2	Wheat	nucleus	97.97	97.97
HORVU2Hr1G082530.1	Barley	cytosol	93.4	95.34
Os10t0122600-01	Rice	cytosol, nucleus, plastid	81.9	80.94
Os02t0440900-00	Rice	cytosol	80.54	79.6
Zm00001d016601_P006	Maize	cytosol	78.17	76.36
OQU85018	Sorghum	nucleus	78.85	76.02
GSMUA_Achr5P23630_001	Banana	cytosol	62.44	61.3
GSMUA_Achr6P03210_001	Banana	cytosol	60.41	60.1
KRH28724	Soybean	plastid	47.21	57.76
CDX75444	Canola	cytosol	51.78	57.3
KRH76738	Soybean	plastid	46.36	56.96
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	52.79	56.93
CDX69071	Canola	cytosol	51.44	56.93
CDX99586	Canola	cytosol	52.62	56.55
CDY15887	Canola	cytosol	52.45	56.47
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	46.19	55.94
AT4G36490.1	Thale cress	plastid	51.27	55.8
KRH24439	Soybean	plastid	30.96	55.79
CDY12126	Canola	cytosol	50.08	55.33
AT4G34580.2	Thale cress	cytosol	51.78	55.23
AT4G39180.1	Thale cress	cytosol	51.78	55.23
Bra034638.1-P	Field mustard	cytosol	50.59	54.96
Bra011544.1-P	Field mustard	cytosol, plastid	46.02	54.95
CDX89709	Canola	cytosol, mitochondrion	42.3	54.95
Bra010699.1-P	Field mustard	cytosol	49.58	54.56
PGSC0003DMT400043532	Potato	cytosol	51.27	54.4
CDX90317	Canola	cytosol	49.41	54.38
CDY45318	Canola	cytosol, plastid	45.85	54.2
KRH51503	Soybean	cytosol	52.45	54.1
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	60.41	54.09
Solyc10g053900.1.1	Tomato	cytosol, plastid	51.78	53.78
AT2G18180.1	Thale cress	plastid	50.59	53.58
KRH08168	Soybean	plastid	50.08	53.33
Bra017663.1-P	Field mustard	cytosol, plastid	41.12	53.29
KRH69861	Soybean	plastid	49.92	53.15
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	51.61	53.14
CDY17469	Canola	cytosol	51.1	52.89
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	51.27	52.79
KRH60806	Soybean	cytosol	50.93	52.62
KRH29420	Soybean	cytosol, nucleus, plastid	50.08	52.58
TraesCS6D01G085200.1	Wheat	plastid	54.48	52.36
AT2G16380.1	Thale cress	cytosol	47.55	51.37
CDX76291	Canola	cytosol	51.1	51.01
PGSC0003DMT400021690	Potato	nucleus	52.12	50.99
Solyc11g040280.1.1	Tomato	cytosol	51.44	50.84
VIT_03s0038g04480.t01	Wine grape	cytosol	53.3	50.81
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	45.35	50.0
TraesCS6D01G085300.6	Wheat	cytosol, nucleus, plastid	49.58	45.01
CDX69225	Canola	mitochondrion	46.19	44.98
TraesCS3D01G255900.4	Wheat	cytosol	43.65	41.95
TraesCS6D01G265200.1	Wheat	cytosol	42.3	40.39
TraesCS7D01G238000.2	Wheat	cytosol	41.29	40.33
TraesCS2D01G506400.1	Wheat	nucleus	42.47	39.65
TraesCS2D01G500100.2	Wheat	mitochondrion	25.04	37.85
TraesCS1D01G372200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	45.52	37.68
TraesCS6D01G149100.1	Wheat	cytosol	13.37	24.16
TraesCS5D01G174400.1	Wheat	cytosol	13.37	23.58
TraesCS7D01G375200.1	Wheat	cytosol	12.52	22.77
CDY02262	Canola	cytosol, plastid	48.05	19.71
Bra013077.1-P	Field mustard	cytosol, plastid	48.05	19.47

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765
PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF137	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:TraesCS2D01G335700	EnsemblPlants:TraesCS2D01G335700.2	TIGR:cd00170	SEG:seg

Description

No Description!

Coordinates

chr2D:+:429054045..429057516

Molecular Weight (calculated)

66589.4 Da

IEP (calculated)

7.946

GRAVY (calculated)

-0.531

Length

591 amino acids

Sequence
(BLAST)

001: MAEVLSGPPE HHLSSAALDT HYEDKRKSNV EYSEDEKKAM IVSLKKKAMN ASQKLRHSMK KGRRSSKVMS ISIEDERDPE EVQAVDAFRQ LLVLEELLPS
101: QHDDYHMMLR FLKARKFDVE KAKQMWSDML QWRKEFGTDT LLEGFEFEEA DKVAECYPQG YHGVDKEGRP VYIERLGQID VTKLMQVTTM ERFVKNHVKE
201: FEKNFADKFP ACSVAAKRHI DQSTTILDVQ GVGMKQFSKA ARDLIGQLQK IDGDNYPETL CRMFIINAGQ GFRLLWSTIK SFLDPKTTAK IHVLGNKYQS
301: KLLEVIDASE LPEFFGGTCQ CQGGCMKADK GPWKNPEVMK MVHSGAGRCG KLNLESLDAG EKMICADNTV YTKKQDPLNG QDEWRNPARA QIEHPQLSPV
401: HEELLPALFP NPGSPYSCDV PMVEKAIDAI CKSHGLTDDN LALTKAVANV SNASNPPMMG GIMALVMSIA TMLRLSRNMP RKVIGAAIGA QGTPKTQAQQ
501: QSKMSTEAEY TVSAKRFADL EEKIIALLAK QAEMPADKEE LLKAATSRVA ALEEELARTN KALQETLERQ QEIMEYIEKK KKKKAKRLFH W

Best Arabidopsis Sequence Match ( AT2G21540.3 )
(BLAST)

001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KNKFDAENTK FIPMIDKTVN ASTWPTNLHK SNYPEPEDLY
401: SAVKPSQRRG GEGYLFGGVM SLVMGLMTVV RLTKNMPRKL TEAAIYGGEV DKAETTMVSN QEYMSMVKRM AELEEKCRSL DNQPAAFSPE KEQILTAALS
501: RVDELELQLA QTKKTLEETM ATQHVIMAYI DKKKKKKKFF GF

Arabidopsis Description

SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.