Factsheet for VIT_03s0038g04480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	57.74	62.37
PGSC0003DMT400043532	Potato	cytosol	55.97	62.3
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	57.42	62.02
Solyc10g053900.1.1	Tomato	cytosol, plastid	56.13	61.16
PGSC0003DMT400021690	Potato	nucleus	57.1	58.61
Solyc11g040280.1.1	Tomato	cytosol	55.97	58.03
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	50.0	57.84
GSMUA_Achr5P23630_001	Banana	cytosol	55.97	57.64
GSMUA_Achr6P03210_001	Banana	cytosol	55.16	57.58
VIT_03s0038g04470.t01	Wine grape	cytosol	54.52	54.08
TraesCS2B01G354800.2	Wheat	nucleus	51.45	53.98
HORVU2Hr1G082530.1	Barley	cytosol	50.32	53.89
Os10t0122600-01	Rice	cytosol, nucleus, plastid	51.77	53.68
TraesCS2A01G327200.2	Wheat	nucleus	51.13	53.64
Os02t0440900-00	Rice	cytosol	51.45	53.34
TraesCS2D01G335700.2	Wheat	nucleus	50.81	53.3
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	56.45	53.03
VIT_18s0001g12950.t01	Wine grape	cytosol	52.42	52.17
OQU84321	Sorghum	cytosol	47.26	51.95
Zm00001d016601_P006	Maize	cytosol	49.84	51.07
OQU85018	Sorghum	nucleus	50.32	50.9
TraesCS6A01G097200.1	Wheat	plastid	49.03	49.59
TraesCS6B01G125700.1	Wheat	plastid	49.03	49.43
TraesCS6D01G085200.1	Wheat	plastid	48.55	48.94
HORVU6Hr1G017580.5	Barley	plastid	49.35	48.73
Os02t0133200-01	Rice	plasma membrane	49.19	48.26
Zm00001d015175_P002	Maize	plastid	48.39	46.51
VIT_02s0154g00510.t01	Wine grape	cytosol	25.0	40.26
VIT_19s0015g01160.t01	Wine grape	cytosol	39.68	39.61
VIT_07s0005g06640.t01	Wine grape	endoplasmic reticulum	37.9	38.46
VIT_10s0116g00400.t01	Wine grape	cytosol	14.19	26.04
VIT_19s0015g00760.t01	Wine grape	cytosol	13.55	24.85

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:100245225	wikigene:100245225	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:CCB60490
ProteinID:CCB60490.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
UniProt:F6I0M4	EMBL:FN596508	InterPro:IPR001251	InterPro:IPR036865	EntrezGene:LOC100245225	wikigene:LOC100245225
PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000210972B	ArrayExpress:VIT_03s0038g04480
EnsemblPlantsGene:VIT_03s0038g04480	EnsemblPlants:VIT_03s0038g04480.t01	RefSeq:XP_002280238	RefSeq:XP_002280238.2	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:3269644..3274533

Molecular Weight (calculated)

70944.2 Da

IEP (calculated)

8.236

GRAVY (calculated)

-0.573

Length

620 amino acids

Sequence
(BLAST)

001: MSDYFSGPLE RSNKPVNEKS DIENSEDERK KKMGTFKKKA ITASSKFRNS LTKKGRRNSK VMNIAVEEDD LDAEELQAVD AFRQALILEE LLPSKHDDSR
101: VMLRFLKARK FDIEKTKQMW ADMINWRKEF GADTIMEDFE FKEIDDVLEY YPQGHHGVDK DGRPVYIERL GKVDPVKLMQ VTTLERYVKY HVREFERTFK
201: VKFPACSIAA KRHIDQSTTI LDVQGVGLKN FNKSARELIM QLQKIDGENY PETLCRMFII NAGSGFRLLW NTVKSFLDPK TTSKIHVLGN KYQSKLLEVI
301: DASELPEFLG GTCTCADKGG CMRSDKGPWN DPEILKMAQN YDAKSFKKIL IPVIDENTVS GEEMAHKKCD SFDSDISFDS GDKWSHSSRL AKEHVEHQPL
401: SPVQEEVSFL KYPNTKDYGG YEYEGFIQVV DKAVDATWPK AVNNNPQFAL SRDCFPTHGD PCRPQGRVTD QIFSGLMSFV VGIITMIRLT KNMPKRLTDA
501: TLYSTPDYCV DTIVKSHAQH PQKSPAPEVS SVDYMSIIKR VAEVEEKMSV LSIKSMAMLA EKEEMMNAAI NRANALEQEL AANRKALEEA LIRQGELMTY
601: IEKKKKKKKK FIKKLNPFCW

Best Arabidopsis Sequence Match ( AT2G21540.6 )
(BLAST)

001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF

Arabidopsis Description

SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [vacuole,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.