Factsheet for VIT_10s0116g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36621	Soybean	cytosol	75.74	77.81
KRH51210	Soybean	cytosol	73.96	76.92
KRH11617	Soybean	cytosol	74.85	76.9
KRH01941	Soybean	cytosol	73.08	76.23
CDY40544	Canola	cytosol	71.89	73.64
VIT_19s0015g00760.t01	Wine grape	cytosol	72.78	72.78
Bra017468.1-P	Field mustard	cytosol	71.6	72.67
CDY41066	Canola	cytosol	71.6	72.67
CDY28908	Canola	cytosol	71.01	72.51
Bra022153.1-P	Field mustard	cytosol	71.01	72.51
CDY25949	Canola	cytosol	71.3	72.37
PGSC0003DMT400034789	Potato	cytosol	72.19	72.19
AT5G47730.1	Thale cress	cytosol	72.49	71.85
Solyc11g012790.1.1	Tomato	cytosol	71.01	71.01
CDX77792	Canola	cytosol	68.64	69.46
Bra024920.1-P	Field mustard	cytosol	68.34	69.16
CDY17710	Canola	cytosol	68.05	68.86
VIT_02s0154g00510.t01	Wine grape	cytosol	18.93	16.62
VIT_18s0001g12950.t01	Wine grape	cytosol	29.29	15.89
VIT_07s0005g06640.t01	Wine grape	endoplasmic reticulum	27.51	15.22
VIT_03s0038g04470.t01	Wine grape	cytosol	28.11	15.2
VIT_19s0015g01160.t01	Wine grape	cytosol	26.92	14.65
VIT_03s0038g04480.t01	Wine grape	cytosol	26.04	14.19
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	21.6	13.62

Protein Annotations

EntrezGene:100262035	wikigene:100262035	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:CBI23513	ProteinID:CBI23513.3
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	UniProt:D7SZ28	EMBL:FN595294
InterPro:IPR001251	InterPro:IPR036865	EntrezGene:LOC100262035	wikigene:LOC100262035	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF140	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	TIGR:TC52658	TIGR:TC55404	TIGR:TC60386	UniParc:UPI0001BE2591	ArrayExpress:VIT_10s0116g00400
EnsemblPlantsGene:VIT_10s0116g00400	EnsemblPlants:VIT_10s0116g00400.t01	unigene:Vvi.2817	RefSeq:XP_002273868	RefSeq:XP_002273868.2	SEG:seg

Description

No Description!

Coordinates

chr10_random:-:189792..194978

Molecular Weight (calculated)

38212.8 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.384

Length

338 amino acids

Sequence
(BLAST)

001: MGIVAEDAVN QFEALMNQVD EPLKKTFQNI HQGYPTGTLV RFLKAREWNV PKAHKMLVDC LNWRVENDID NILAKPIVPT DLYRGVRDSQ LIGLSGYTKE
101: GLPVFAIGAG FSTFDKASVH YYVQSHIQIN EYRDRVILPS ASKKHGRHIT SCVKVLDMTG LKLSALSQIK LLTIMSTIDD LNYPEKTNTY YIVNAPYIFS
201: ACWKVVKPLL QERTRKKIQV LPGCGRDELL KIMDYASLPH FCRREGSGSS RHSGNETDNC YTLDHPFHQQ LYNYIKQQAS IIAPAGPYKQ GSIHVHLPES
301: AAEESEIAKT IESELQKFGN QTRLTDSLDA LKVSDNRN

Best Arabidopsis Sequence Match ( AT5G47730.1 )
(BLAST)

001: MGIVSEEAID EFQELMDQVE EPLKKTYERV HQGYLRENLG RFLKARDWNV CKAHTMLVEC LRWRVDNEID SILSKPIVPT ELYRDVRDSQ LIGMSGYTKE
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS ISKKNGRPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGRDELL KIMDFTSLPH FCRSGSSGSS HHTQSANCFS INHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPEA
301: ERCVIAKTIE SELHKFENRN GLAVSIDDRK SSHETLANGD L

Arabidopsis Description

At5g47730 [Source:UniProtKB/TrEMBL;Acc:Q9FIK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.