Factsheet for VIT_04s0023g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28724	Soybean	plastid	50.0	55.49
KRH76738	Soybean	plastid	49.63	55.3
KRH08168	Soybean	plastid	56.72	54.77
AT4G36490.1	Thale cress	plastid	55.22	54.51
KRH69861	Soybean	plastid	56.16	54.23
GSMUA_Achr6P03210_001	Banana	cytosol	58.02	52.36
GSMUA_Achr5P23630_001	Banana	cytosol	57.65	51.33
VIT_03s0038g04480.t01	Wine grape	cytosol	57.84	50.0
AT2G18180.1	Thale cress	plastid	52.05	50.0
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	59.7	48.48
HORVU2Hr1G082530.1	Barley	cytosol	50.37	46.63
VIT_03s0038g04470.t01	Wine grape	cytosol	53.36	45.76
TraesCS2A01G327200.2	Wheat	nucleus	50.37	45.69
Os10t0122600-01	Rice	cytosol, nucleus, plastid	50.93	45.65
TraesCS2B01G354800.2	Wheat	nucleus	50.19	45.52
TraesCS2D01G335700.2	Wheat	nucleus	50.0	45.35
OQU84321	Sorghum	cytosol	47.57	45.21
CDX69225	Canola	mitochondrion	51.12	45.14
Zm00001d016601_P006	Maize	cytosol	50.93	45.12
Os02t0440900-00	Rice	cytosol	50.0	44.82
OQU85018	Sorghum	nucleus	51.12	44.7
VIT_18s0001g12950.t01	Wine grape	cytosol	51.87	44.62
TraesCS6B01G125700.1	Wheat	plastid	50.37	43.9
TraesCS6D01G085200.1	Wheat	plastid	50.37	43.9
TraesCS6A01G097200.1	Wheat	plastid	50.19	43.88
Os02t0133200-01	Rice	plasma membrane	51.31	43.51
HORVU6Hr1G017580.5	Barley	plastid	50.75	43.31
Zm00001d015175_P002	Maize	plastid	50.19	41.71
VIT_19s0015g01160.t01	Wine grape	cytosol	40.3	34.78
VIT_07s0005g06640.t01	Wine grape	endoplasmic reticulum	36.94	32.41
VIT_02s0154g00510.t01	Wine grape	cytosol	20.34	28.31
VIT_10s0116g00400.t01	Wine grape	cytosol	13.62	21.6
VIT_19s0015g00760.t01	Wine grape	cytosol	12.31	19.53

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:CCB44418	ProteinID:CCB44418.1	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F6GWT3	EMBL:FN594959
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	TMHMM:TMhelix	UniParc:UPI00021094FD	ArrayExpress:VIT_04s0023g02400	EnsemblPlantsGene:VIT_04s0023g02400
EnsemblPlants:VIT_04s0023g02400.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18957444..18961992

Molecular Weight (calculated)

61749.3 Da

IEP (calculated)

7.695

GRAVY (calculated)

-0.475

Length

536 amino acids

Sequence
(BLAST)

001: MVYVSTEVDH SVCERENRIG SLKKKANNAS SKFRHSLTKR GRRSGKVMSV DIEDVHDAEE LQAVDALRQA LISEDRLPSR HDDYHMLLRF LKARKFDLEK
101: TKQMWIDMLQ WRKDFGADTI MEDFEFKELN EVIEHYPQGH HGVDKEGRPV YIERLGKVDA NKLMQATTMD RYVKYHVQEF ERTFVIKFPS CSISARKQID
201: QSTTILDVQG VGLKHFTKSA RELIVNLQKV DGDNYPETLN RMFIINAGSG FRLLWNTVKS FLDPKTTSKI HMVQNGYAIC RTKCESQSTA EKTISEDEIV
301: YPKVSREVED IQSLSPEVPR SYIEHPNLSP VHEEVRINQN FHKSYNYEDF IPIIDKSMNA PWQNVMENDR YALSKAADCF TIHDAYKAPD GFSTQIFTGV
401: MALVMGIVTM IRLTRTMPKK FTDANLYPGP IYCVDAMIKS HPYAHQLSAP VITGTEFLAF MKRMAEMEDR VSVLSVKPTA MPADKEDLLN AALIRIDTLE
501: RELAATKKTL EEAMAQQEEV LAYIEKKKKK KKLVFY

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.