CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89318
CDX94304
CDX97358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	CDX89318	AT4G26630.1	25387881
AT4G36490.1	CDX94304	AT4G26630.1	25387881
AT4G36490.1	CDX97358	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G36490.1	Thale cress	plastid	76.77	85.82
KRH76738	Soybean	plastid	49.59	62.58
KRH28724	Soybean	plastid	48.93	61.49
KRH08168	Soybean	plastid	54.7	59.82
KRH69861	Soybean	plastid	54.2	59.28
CDY15888	Canola	cytosol	26.85	57.6
CDX99587	Canola	cytosol, mitochondrion	26.52	56.89
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	51.4	54.36
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	51.07	54.01
CDX99586	Canola	cytosol	48.76	53.82
CDY15887	Canola	cytosol	48.6	53.73
Solyc11g040280.1.1	Tomato	cytosol	52.72	53.51
PGSC0003DMT400021690	Potato	nucleus	52.72	52.98
CDX75444	Canola	cytosol	46.46	52.81
PGSC0003DMT400043532	Potato	cytosol	48.27	52.6
CDX69071	Canola	cytosol	46.13	52.43
Solyc10g053900.1.1	Tomato	cytosol, plastid	48.93	52.2
CDX90317	Canola	cytosol	45.3	51.21
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	45.14	51.12
CDY12126	Canola	cytosol	44.98	51.03
CDY45318	Canola	cytosol, plastid	41.52	50.4
CDX89709	Canola	cytosol, mitochondrion	37.56	50.11
OQU84321	Sorghum	cytosol	45.96	49.47
GSMUA_Achr5P23630_001	Banana	cytosol	48.93	49.34
CDY17469	Canola	cytosol	46.29	49.21
GSMUA_Achr6P03210_001	Banana	cytosol	47.94	48.99
CDX76291	Canola	cytosol	46.29	47.47
Os10t0122600-01	Rice	cytosol, nucleus, plastid	45.63	46.32
TraesCS2D01G335700.2	Wheat	nucleus	44.98	46.19
TraesCS2A01G327200.2	Wheat	nucleus	44.98	46.19
HORVU2Hr1G082530.1	Barley	cytosol	43.82	45.94
TraesCS2B01G354800.2	Wheat	nucleus	44.65	45.85
Os02t0440900-00	Rice	cytosol	44.98	45.65
TraesCS6B01G125700.1	Wheat	plastid	45.96	45.37
TraesCS6A01G097200.1	Wheat	plastid	45.63	45.19
Os02t0133200-01	Rice	plasma membrane	46.95	45.09
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	48.93	45.0
Zm00001d016601_P006	Maize	cytosol	44.81	44.96
TraesCS6D01G085200.1	Wheat	plastid	45.47	44.88
OQU85018	Sorghum	nucleus	44.81	44.37
HORVU6Hr1G017580.5	Barley	plastid	45.8	44.27
Zm00001d015175_P002	Maize	plastid	46.46	43.72
CDY11954	Canola	cytosol	14.0	43.59
CDY12125	Canola	cytosol	43.99	43.34
CDX90316	Canola	cytosol	43.99	43.2
CDX82040	Canola	cytosol	42.5	42.79
CDX85889	Canola	cytosol	42.17	42.17
CDX68133	Canola	cytosol	42.17	42.11
CDY13810	Canola	cytosol	43.33	41.61
CDY39363	Canola	cytosol	40.36	41.39
CDY29415	Canola	nucleus	40.86	40.33
CDY11957	Canola	cytosol	29.16	39.78
CDY17730	Canola	cytosol	24.22	36.57
CDX77773	Canola	cytosol	24.22	36.12
CDY52084	Canola	cytosol	34.93	36.12
CDX77382	Canola	cytosol	35.58	34.9
CDY51966	Canola	cytosol	31.8	32.44
CDY17397	Canola	cytosol	31.8	32.44
CDY36780	Canola	plastid	29.98	31.93
CDY50018	Canola	vacuole	32.29	30.67
CDY10540	Canola	cytosol, nucleus, plastid	32.45	30.64
CDY42378	Canola	nucleus	32.29	30.48
CDY51073	Canola	mitochondrion, nucleus	24.88	29.55
CDY53762	Canola	cytosol	12.36	22.94
CDY52903	Canola	cytosol	12.36	22.94
CDY25949	Canola	cytosol	12.19	22.22
CDY40544	Canola	cytosol	12.03	22.12
CDY28908	Canola	cytosol	12.03	22.05
CDY41066	Canola	cytosol	12.03	21.92
CDY42389	Canola	cytosol	11.53	21.54
CDY10527	Canola	cytosol	11.37	21.23
CDX77792	Canola	cytosol	11.2	20.36
CDY17710	Canola	cytosol	10.87	19.76
CDY02262	Canola	cytosol, plastid	41.35	17.42
CDY36781	Canola	extracellular	0.66	2.38

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	EnsemblPlants:CDX69225	ProteinID:CDX69225	ProteinID:CDX69225.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	EnsemblPlantsGene:GSBRNA2T00131030001	InterPro:IPR001251
InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EE7E1E	SEG:seg

Description

BnaC01g02280D

Coordinates

chrLK031789:-:3575111..3580688

Molecular Weight (calculated)

69084.9 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.465

Length

607 amino acids

Sequence
(BLAST)

001: MGSFKKRSSS KNLRYSMKRR TSSKVTPVEI EDVHDAEELK SVDAFRQALI LDELLPEKHD DYHMMLRFLK ARKFDLDKTK LMWTEMLRWR KEFGADTVME
101: EFEFKEIDEV LKYYPQGHHG VDKEGRPVYI ERLGQVDSTK LMQVTTLDRY VNYHVMEFER TFNVKFPACS IAAKKQIDQS TTILDVQGVG LKNFNKAARD
201: LVTRLQAVDG NNYPESLNRM FIINAGSGFR MLWSTQRSMQ VLGNKYQSKL LEIIDESELP EFLGGTCTCA DSGGCMRSDK GPWNNPEIMQ RVKNGDHKCT
301: KRSQAENGAE ETIFEGSEST AEQAPEETKD SAQPSSSSSD IVPVAAHPAW NMPEAHKFSL SKKEVYAIQE ACNTATSDGG RSPIFTGVMA LVMGVVTMIR
401: VTKNVPRKLT ESTLYSSPVY CDDASMNKSA MQSEKMMVPA ISGEDFMAIM KRMAELEQKV TVLSAQPTTM PPEKEEMLNA AISRSNVLEQ ELAATKKALD
501: DSLGRQEDLV AYIEKKKKKK KLMFTDISFG DITLEHVKMI SEVFIAEPLP NKWCKLTVFV GLTTLLFNRL LWSSYVDSLE EYLDQISHSR FEKYNEVVSH
601: VMYRIDY

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.