CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 4
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98502
KRG98507
KRH46360
KRH46364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	KRG98502	AT4G26630.1	25387881
AT4G36490.1	KRG98507	AT4G26630.1	25387881
AT4G36490.1	KRH46360	AT4G26630.1	25387881
AT4G36490.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69861	Soybean	plastid	94.59	94.59
KRH76738	Soybean	plastid	67.39	77.75
KRH28724	Soybean	plastid	67.21	77.23
AT4G36490.1	Thale cress	plastid	65.05	66.48
AT2G18180.1	Thale cress	plastid	63.96	63.62
KRH24439	Soybean	plastid	36.04	60.98
PGSC0003DMT400043532	Potato	cytosol	59.1	58.89
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	60.72	58.71
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	60.36	58.36
KRH29420	Soybean	cytosol, nucleus, plastid	58.92	58.08
Solyc10g053900.1.1	Tomato	cytosol, plastid	59.46	58.0
Solyc11g040280.1.1	Tomato	cytosol	61.98	57.53
KRH51503	Soybean	cytosol	59.28	57.42
PGSC0003DMT400021690	Potato	nucleus	62.16	57.12
KRH60806	Soybean	cytosol	58.74	56.99
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	54.77	56.72
GSMUA_Achr5P23630_001	Banana	cytosol	60.54	55.81
GSMUA_Achr6P03210_001	Banana	cytosol	59.46	55.56
CDX69225	Canola	mitochondrion	59.82	54.7
OQU84321	Sorghum	cytosol	54.77	53.9
Os10t0122600-01	Rice	cytosol, nucleus, plastid	55.5	51.51
Os02t0440900-00	Rice	cytosol	55.32	51.34
HORVU2Hr1G082530.1	Barley	cytosol	52.97	50.78
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	60.0	50.45
TraesCS6B01G125700.1	Wheat	plastid	55.68	50.24
TraesCS2D01G335700.2	Wheat	nucleus	53.33	50.08
TraesCS6A01G097200.1	Wheat	plastid	55.32	50.08
TraesCS6D01G085200.1	Wheat	plastid	55.32	49.92
TraesCS2A01G327200.2	Wheat	nucleus	53.15	49.92
TraesCS2B01G354800.2	Wheat	nucleus	53.15	49.92
Os02t0133200-01	Rice	plasma membrane	56.22	49.37
KRH60804	Soybean	cytosol	55.5	49.36
HORVU6Hr1G017580.5	Barley	plastid	55.68	49.2
KRH29416	Soybean	cytosol	55.68	49.13
Zm00001d016601_P006	Maize	cytosol	53.33	48.93
KRH51809	Soybean	nucleus	51.89	48.65
KRH24438	Soybean	cytosol	55.14	48.65
OQU85018	Sorghum	nucleus	53.33	48.29
KRH05860	Soybean	cytosol	54.05	48.0
KRH61132	Soybean	cytosol	51.17	47.97
Zm00001d015175_P002	Maize	plastid	55.5	47.75
KRH15161	Soybean	cytosol	53.51	47.14
KRH51499	Soybean	cytosol	54.05	46.8
KRG99756	Soybean	cytosol	31.89	45.97
KRH77370	Soybean	cytosol	32.61	39.09
KRH45371	Soybean	cytosol	30.99	39.09
KRG99773	Soybean	cytosol, nucleus, plastid	41.44	38.72
KRH28067	Soybean	cytosol	31.89	38.48
KRH46724	Soybean	cytosol, nucleus, plastid	40.72	38.05
KRH62508	Soybean	cytosol	41.26	36.94
KRH56402	Soybean	cytosol	40.36	36.13
KRH07662	Soybean	cytosol	40.0	35.86
KRG99659	Soybean	cytosol, nucleus, plastid	4.32	31.58
KRG99658	Soybean	cytosol, nucleus, plastid	4.32	31.58
KRH65859	Soybean	cytosol	6.67	25.87
KRH14208	Soybean	cytosol	14.59	25.16
KRH36621	Soybean	cytosol	14.77	24.92
KRH11617	Soybean	cytosol	14.59	24.62
KRH01941	Soybean	cytosol	14.23	24.38
KRH51210	Soybean	cytosol	14.23	24.31
KRH73923	Soybean	cytosol	9.19	24.29
KRH46410	Soybean	cytosol	14.41	23.67
KRG82898	Soybean	cytosol	7.93	23.4
KRH75081	Soybean	extracellular, mitochondrion	5.05	22.76
KRH46406	Soybean	cytosol	10.27	22.01
KRG98457	Soybean	cytosol	15.14	20.49
KRH46400	Soybean	cytosol	9.73	20.07
KRG99755	Soybean	endoplasmic reticulum	5.77	16.33
KRG82897	Soybean	cytosol	3.06	15.6

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:100785716	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02010147	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G133300	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001251	InterPro:IPR036865	UniProt:K7MH49	EnsemblPlants:KRH08168
ProteinID:KRH08168	ProteinID:KRH08168.1	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
TMHMM:TMhelix	UniParc:UPI000233F1C5	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:28980524..28985880

Molecular Weight (calculated)

63532.3 Da

IEP (calculated)

6.747

GRAVY (calculated)

-0.605

Length

555 amino acids

Sequence
(BLAST)

001: MSGPLSPKTS LEKSDRVGSL KKMLRNSLTR SKRRSSSKVM SVEIEDIRDA EESKAVDEFR QALVLDELLP EKHDDYHMLL RFLKARKFDL EKSKQMWSDM
101: LQWRKEFGAD TITEDFEFKE LDEVLQYYPQ GHHGVDKDGR PIYIERLGQV DATKLMQVTT MDRYIKYHVK EFERTFDVKF AACTIAAKKH IDQSTTILDV
201: QGVGLKNFNK HARELITRLQ KIDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTS KIHVLGNKYQ SKLLEIIDES ELPEFLGGAC TCADQGGCMR
301: SDKGPWKDAD IMKMVQNGEH KCSRKCEVPV MEEKTTSEEH ETPKLEANLA AQLSSVFAEV PASKAYNYED FVPEADKTAW NKKMEENEKF AVSKAGAVDA
401: YAMVDSFKIH EKVNSQIFTG VMAFVMGIVT MVRMTKNMPK KLTDANFYSN FGGEYKGQAP NTEEMTTMPN ISAQEFMTVM KRMAELEDRM VNMNNQTTCM
501: PPEKEEMLNA AISRADALEQ ELLATKKALE DSLSKQEELS AYIEKKKKKK KLFAW

Best Arabidopsis Sequence Match ( AT4G36490.1 )
(BLAST)

001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW

Arabidopsis Description

SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.