Factsheet for TraesCS6B01G125700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36490.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT4G36490.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT4G36490.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G085200.1	Wheat	plastid	96.26	96.26
TraesCS6A01G097200.1	Wheat	plastid	95.45	95.76
HORVU6Hr1G017580.5	Barley	plastid	92.36	90.45
Os02t0133200-01	Rice	plasma membrane	80.81	78.64
OQU84321	Sorghum	cytosol	72.03	78.55
Zm00001d015175_P002	Maize	plastid	75.12	71.63
KRH76738	Soybean	plastid	45.69	58.42
GSMUA_Achr6P03210_001	Banana	cytosol	55.45	57.41
KRH28724	Soybean	plastid	45.04	57.35
AT4G36490.1	Thale cress	plastid	49.59	56.17
KRH69861	Soybean	plastid	50.57	56.04
KRH08168	Soybean	plastid	50.24	55.68
GSMUA_Achr5P23630_001	Banana	cytosol	54.31	55.48
KRH24439	Soybean	plastid	29.27	54.88
TraesCS2B01G354800.2	Wheat	nucleus	52.52	54.65
AT2G18180.1	Thale cress	plastid	47.8	52.69
CDX75444	Canola	cytosol	45.53	52.43
CDY15887	Canola	cytosol	46.67	52.28
CDX99586	Canola	cytosol	46.67	52.18
PGSC0003DMT400043532	Potato	cytosol	47.15	52.06
CDX69071	Canola	cytosol	45.2	52.06
KRH29420	Soybean	cytosol, nucleus, plastid	47.32	51.69
KRH60806	Soybean	cytosol	47.97	51.57
Solyc10g053900.1.1	Tomato	cytosol, plastid	47.64	51.49
KRH51503	Soybean	cytosol	47.97	51.48
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	45.85	51.46
CDX89709	Canola	cytosol, mitochondrion	38.05	51.43
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	55.12	51.36
Solyc11g040280.1.1	Tomato	cytosol	49.92	51.34
Bra034638.1-P	Field mustard	cytosol	45.04	50.92
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	47.48	50.87
CDY12126	Canola	cytosol	44.23	50.84
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	47.32	50.7
AT4G34580.2	Thale cress	cytosol	45.53	50.54
Bra011544.1-P	Field mustard	cytosol, plastid	40.65	50.51
CDX90317	Canola	cytosol	44.06	50.47
VIT_04s0023g02400.t01	Wine grape	cytosol, nucleus, plastid	43.9	50.37
PGSC0003DMT400021690	Potato	nucleus	49.43	50.33
Bra010699.1-P	Field mustard	cytosol	43.9	50.28
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	39.84	50.2
CDY45318	Canola	cytosol, plastid	40.81	50.2
AT4G39180.1	Thale cress	cytosol	44.88	49.82
VIT_03s0038g04480.t01	Wine grape	cytosol	49.43	49.03
CDY17469	Canola	cytosol	45.37	48.86
AT2G16380.1	Thale cress	cytosol	43.41	48.81
Bra017663.1-P	Field mustard	cytosol, plastid	36.1	48.68
CDX76291	Canola	cytosol	45.37	47.13
CDX69225	Canola	mitochondrion	45.37	45.96
TraesCS6B01G125600.1	Wheat	cytosol, nucleus, plastid	45.69	44.6
TraesCS1B01G384500.1	Wheat	cytosol, nucleus, plastid	42.6	42.19
TraesCS3B01G287000.6	Wheat	cytosol	41.46	39.97
TraesCS2B01G527900.2	Wheat	mitochondrion	25.2	39.34
TraesCS6B01G313500.1	Wheat	cytosol	38.21	37.96
TraesCS2B01G533900.1	Wheat	nucleus	38.37	37.46
TraesCS7B01G135600.2	Wheat	plastid	38.37	35.38
TraesCS6B01G188100.1	Wheat	cytosol	12.68	23.85
TraesCS5B01G166800.1	Wheat	cytosol	12.85	23.58
TraesCS7B01G280200.2	Wheat	cytosol	12.2	23.08
CDY02262	Canola	cytosol, plastid	43.09	18.39
Bra013077.1-P	Field mustard	cytosol, plastid	43.09	18.16

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765
PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF55	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:TraesCS6B01G125700	EnsemblPlants:TraesCS6B01G125700.1	TIGR:cd00170	SEG:seg

Description

No Description!

Coordinates

chr6B:-:120665761..120673487

Molecular Weight (calculated)

67642.0 Da

IEP (calculated)

7.609

GRAVY (calculated)

-0.487

Length

615 amino acids

Sequence
(BLAST)

001: MSTPTAAAAD GAASTPTSRA PGMASSASLR HRAMSASSKM LRSSLSRRSG RQRSSKVMSV AIEDVRDAKE AASVDAFRQT LVLEELLPAR HDDYHMMLRF
101: LKARKFEIDK SKQMWSDMLN WRKEFGTDTI MEDFQFEEVE QVLEHYPQGH HGVDKDGRPI YIEKLGAIDT TKLLQVTSMD RYVRYHVREF ERAFALKFPA
201: CSISVKRHVD QSTTILDVSG VGYKNFNKAA RDLIGQLQKI DGDNYPETLC RMFIINAGQG FRLLWNTVKS FLDPKTTAKI HVLGNKYQSK LLEVIDPSEL
301: PEFLGGTCVC EGGGCMRSDK GPWKDPEIIK MVQCGLGRCG MNNSDPASAE EKTITEDDAA PAAKKQESMR RDATDSPKAA HDKIEHPPHM APLPEVPNEE
401: AKDSQGAPSG KEGGSAPYDD LFPMADKGMD FNWNGEMSAE KLAIARDMYA SLPDAYKHGD AGDRQVVTGF MAFVMGVVAM FRVGKIAPKR AMDAAMGIAT
501: MEAMAKNRKL LQAQGQGGAG GPVVVAGVST AQFDALAKRV GELEEKVAAL GSRAPEMPAD KAEQLAAAAT RLDTLEAELE STKKLLETSK GQQEEVLAYI
601: EKKKKKKGMQ NPFRW

Best Arabidopsis Sequence Match ( AT2G18180.1 )
(BLAST)

001: MSLNVDLDVC VLERPNVCSF KKRSCSKLSC SLTKKRRSSK VMSVEIFEDE HDAEELKVVD AFRQVLILDE LLPDKHDDYH MMLRFLKARK FDLEKTNQMW
101: SDMLRWRKEF GADTVMEDFE FKEIDEVLKY YPQGHHGVDK EGRPVYIERL GQVDSTKLMQ VTTMDRYVNY HVMEFERTFN VKFPACSIAA KKHIDQSTTI
201: LDVQGVGLKN FNKAARDLIT RLQKVDGDNY PETLNRMFII NAGSGFRMLW NTVKSFLDPK TTAKIHVLGN KYQSKLLEII DASELPEFLG GSCTCADNGG
301: CMRSDKGPWN NPDIMKRVNN GDHICSKRSQ ADNAGENIIS QGNNSAVEEA PETDQSQPSP CQNVVVAHPA WNIPEAHKFS LSKRDVYAIQ EACKATNESG
401: RSPIFTGVMA FVMGVVTMIR VTKNVPRKLT ESTIYSSPVY CDENSMNKSS MHGKKMATTT ISGEDFMAVM KRMAELEQKV TNLSAQPATM PPEKEEMLNA
501: AISRADFLEQ ELAATKKALD DSLTRQEDLV AYVERKKKKK KLVRFQINAY LTNFCFGV

Arabidopsis Description

SFH10Phosphatidylinositol/phosphatidylcholine transfer protein SFH10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SI13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.