Factsheet for Bra013077.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02262	Canola	cytosol, plastid	98.42	99.65
AT2G16380.1	Thale cress	cytosol	28.99	77.33
Bra034638.1-P	Field mustard	cytosol	26.46	70.96
Bra011544.1-P	Field mustard	cytosol, plastid	23.44	69.09
Bra017663.1-P	Field mustard	cytosol, plastid	20.84	66.67
Bra030295.1-P	Field mustard	cytosol	11.93	61.48
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	18.44	55.12
Bra010699.1-P	Field mustard	cytosol	20.15	54.75
KRH24439	Soybean	plastid	12.27	54.57
KRH51503	Soybean	cytosol	20.15	51.31
PGSC0003DMT400043532	Potato	cytosol	19.47	50.99
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	19.95	50.7
KRH29420	Soybean	cytosol, nucleus, plastid	19.47	50.44
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	19.81	50.35
Solyc10g053900.1.1	Tomato	cytosol, plastid	19.6	50.26
KRH60806	Soybean	cytosol	19.67	50.17
PGSC0003DMT400021690	Potato	nucleus	20.42	49.34
Solyc11g040280.1.1	Tomato	cytosol	20.01	48.83
Os02t0440900-00	Rice	cytosol	19.74	48.16
TraesCS2D01G335700.2	Wheat	nucleus	19.47	48.05
TraesCS2A01G327200.2	Wheat	nucleus	19.4	47.88
GSMUA_Achr6P03210_001	Banana	cytosol	19.47	47.81
TraesCS2B01G354800.2	Wheat	nucleus	19.33	47.72
Os10t0122600-01	Rice	cytosol, nucleus, plastid	19.47	47.49
OQU84321	Sorghum	cytosol	18.3	47.34
HORVU2Hr1G082530.1	Barley	cytosol	18.78	47.32
GSMUA_Achr5P23630_001	Banana	cytosol	19.33	46.84
OQU85018	Sorghum	nucleus	19.6	46.66
Zm00001d016601_P006	Maize	cytosol	19.33	46.61
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	19.88	43.94
Bra010700.1-P	Field mustard	cytosol	18.57	43.85
TraesCS6A01G097200.1	Wheat	plastid	18.37	43.72
Os02t0133200-01	Rice	plasma membrane	18.92	43.67
Zm00001d015175_P002	Maize	plastid	19.12	43.26
TraesCS6B01G125700.1	Wheat	plastid	18.16	43.09
TraesCS6D01G085200.1	Wheat	plastid	18.09	42.93
HORVU6Hr1G017580.5	Barley	plastid	18.44	42.83
Bra025754.1-P	Field mustard	nucleus	17.75	42.46
Bra031196.1-P	Field mustard	cytosol	17.82	41.14
Bra003757.1-P	Field mustard	cytosol	17.48	40.35
Bra024938.1-P	Field mustard	cytosol	10.69	38.81
Bra002841.1-P	Field mustard	cytosol	12.13	33.84
Bra030841.1-P	Field mustard	nucleus	12.89	31.39
Bra015089.1-P	Field mustard	cytosol	10.62	28.97
Bra030831.1-P	Field mustard	cytosol	5.48	24.62
Bra022153.1-P	Field mustard	cytosol	5.55	24.47
Bra038021.1-P	Field mustard	cytosol	5.41	24.16
Bra038012.1-P	Field mustard	cytosol	17.14	23.63
Bra017468.1-P	Field mustard	cytosol	5.35	23.42
Bra024920.1-P	Field mustard	cytosol	5.35	23.35
Bra028944.1-P	Field mustard	plastid	11.04	23.13
Bra002840.1-P	Field mustard	cytosol	0.07	1.3

Protein Annotations

Gene3D:1.10.8.20	MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	Gene3D:3.40.525.10
EnsemblPlantsGene:Bra013077	EnsemblPlants:Bra013077.1	EnsemblPlants:Bra013077.1-P	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001251	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR036865
InterPro:IPR038718	UniProt:M4D9B7	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807
SMART:SM00487	SMART:SM00490	SMART:SM00516	SMART:SM01100	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF46938	SUPFAM:SSF52087	SUPFAM:SSF52540	UniParc:UPI0002540AE4	SEG:seg	:

Description

AT2G16390 (E=0.0) DRD1, CHR35, DMS1 | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA03:+:20604306..20612976

Molecular Weight (calculated)

164625.0 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.398

Length

1459 amino acids

Sequence
(BLAST)

0001: MGGLDIETSE DERKIVKISS FRKKAISASN RFKKSFRRKS RRTSSRIVSE PGGINAEDLR SIDAFRQLLL QDDLLPTQHD DPHMMLRFLR ARKLDTEKAK
0101: QMWSDMLQWR KDFGADTIIE DFEFEEIDEV VKHYPQGYHG VDKEGRPVYI ERLGQIDANK LLQVTTMDRY ERYHVKEFEK MFNIKFPSCS AAAKKHIDQS
0201: TTIFDVQGVG LKNFNKCARE LLQRLLKIDN ENYPETLNRM FIINAGPGFR LLWGPVKSFL DPKTTSKIHV LGNKYQSKLL EAIDASELPH FFGGRCTCEG
0301: KGGCMRSDKG PWNDPEILKM VKNPEAKFST ISEDERILVE DEISMVFEPL ERKKKRTIKV NVCEKHIATV DKFMALSLPE KPPKTVKRGN GLPKKDDGFL
0401: VGGVIAFVMG ILAMVRLSKH VPRKLTEAAL FGNSVYNEES KMTNPDQDQL STPVSSSEYV LMAKRMSDLE EKYMSLDSKP ADDGLEKEDK LQAALNRVQV
0501: LEHELSETKK ALDETIAKQN GILEFIEKKK KKKRLATGKK VQSGLLVASL ILLMEILQPT SNGHRKRKPD DALSLASEAK RLRNSSKVTD FSHPFAVTNM
0601: LEALDGGKFG SVTKELEEVA NLRMELVKRC VWLYPSLAHT VFGADDGQEE LVSLENQLAL DSVIDLDGGD GTEKALCVVP STEIVILDSD DDEDEGVESE
0701: KPKYPFQSSL VQHQKSQGDV QLVTPQFAFE EVVLGKGKEM SCAITALVEG QSSRGNLLAL ENGMAIDKER KREKVLAIEN GVVNDKGVYV GVEEDESGDE
0801: SEAADEDLGN IWSEMAMSIV CSKDVDNSRN ESKTDEVEDC EHSFILKDDM GYVCRVCGVI DKSILDIIDV NFSKAKRSTR TYASEARMKK FGESDFEIKL
0901: SEEGLMIGGL SAHPTHANKM KPHQIEGFQF LCSNLVADEP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ AKPLVVLPKG ILSTWKREFV RWQVEDIPLL
1001: DFYSAKAENR AQQLAILKQW MEKKSILFLG YKQFSTIVCD DTSTDSRSCQ EILLKVPSIL ILDEGHTPRN EDTNVLQSLA QVQTPRKVVL SGTLYQNHVK
1101: EVFNILNLVR PKFLKLDTSK SIVKRILSRA PISDVRSHLG GSSDVSAAFN EIVEHTLQKC QDFKMKINMI QDLREMTKKV LHYYKGDFLD ELPGLDDFTV
1201: VLNLSPRQLT EVKKLRREKR KFKVSAVGSA IYLHPKLNAF SEKTDNVSDT TMDEMLEKLD VNEGVKAKFF LNLIDLCDSA GEKLLVFSQY LVPLKFLERL
1301: AALAKGWKLG KEVFVLTGES SSEQRELSME RFNNSPDAKV FFGSIRACGE GISLVGASRI LILDVPLNPS VTRQAIGRAF RPGQTKKVHA YRLIAGSSPE
1401: EEDHNTCFKK EVISKMWFEW NEYCGFRNFE VETIDVDDAG DMFLESPALR EDIRVLYKR

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.