Factsheet for Bra025754.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29415	Canola	nucleus	99.84	99.02
AT1G19650.1	Thale cress	cytosol	81.31	81.58
Bra003757.1-P	Field mustard	cytosol	70.16	67.72
Bra030295.1-P	Field mustard	cytosol	31.31	67.49
Solyc04g080690.1.1	Tomato	cytosol	26.89	57.54
Bra010700.1-P	Field mustard	cytosol	57.7	56.96
Bra031196.1-P	Field mustard	cytosol	57.05	55.06
PGSC0003DMT400009598	Potato	cytosol	31.31	54.42
Bra034638.1-P	Field mustard	cytosol	44.59	50.0
Bra011544.1-P	Field mustard	cytosol, plastid	38.52	47.47
Bra010699.1-P	Field mustard	cytosol	40.82	46.37
Bra017663.1-P	Field mustard	cytosol, plastid	34.26	45.83
Bra030294.1-P	Field mustard	cytosol, nucleus, plastid	36.56	45.7
Bra024938.1-P	Field mustard	cytosol	25.25	38.31
Bra002841.1-P	Field mustard	cytosol	31.8	37.09
Bra030841.1-P	Field mustard	nucleus	35.25	35.89
Bra015089.1-P	Field mustard	cytosol	28.2	32.15
Bra038021.1-P	Field mustard	cytosol	13.93	25.99
Bra030831.1-P	Field mustard	cytosol	13.44	25.23
Bra022153.1-P	Field mustard	cytosol	13.28	24.47
Bra017468.1-P	Field mustard	cytosol	13.28	24.32
Bra028944.1-P	Field mustard	plastid	27.38	23.99
Bra024920.1-P	Field mustard	cytosol	12.62	23.05
Bra038012.1-P	Field mustard	cytosol	37.05	21.36
Bra013077.1-P	Field mustard	cytosol, plastid	42.46	17.75
Bra002840.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	EnsemblPlantsGene:Bra025754	EnsemblPlants:Bra025754.1	EnsemblPlants:Bra025754.1-P
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001251	InterPro:IPR036865	UniProt:M4EAE6
PFAM:PF00650	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF145	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000253EE84	SEG:seg	:	:

Description

AT1G19650 (E=3e-269) | SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative

Coordinates

chrA06:-:7719739..7722835

Molecular Weight (calculated)

69663.3 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.552

Length

610 amino acids

Sequence
(BLAST)

001: MSGPLDRFTI PCFEGFSSTD ERRERKSDFE VSEDEKKTRI GIFKKKASKA SSKLRRSLSR KRRPSKGRSI DRTPSLTFED IHDVEELRYV SEFRQSLISD
101: DLLPPNLDDY HMMLRFLYAR RFDLGKAKLM WANMIQWRKD FGTDTLLEDF EFPELDQVLK YYPQGYHGVD KEGRPVYIER LGRVDPCKLL QVTTLERYLR
201: YHVKEFEKTV TIKFPACCIA AKRHVDSSTT ILDVQGVGLK NFTKSARDLI TQLQKIDNDN YPETLHRMFI INAGPGFKLL WGTVKSFLDP KTVSKIDVLG
301: NKYQNKLLEV VDASQLPDFL GGTCTCADQG GCMRSDKGPW KDPEILKMGR SGGTFCRHAG AQISPSHKQT YYGMKASDTS TAESGSEVEE LSSPKTNIYN
401: HVPKLTPVSE NIKANGKASP SVLSEYEDCV PMVDKVVDVA WQSQEMITNV SKGPEYTSGL ERIETVNHIW RWLTMFFMNI LALFASLTLP QTIRHSQLIP
501: SSARDELCDE PNARESRPPS PSRPSTIDER VIMSSVVSRL GDLEKQIETL HLRKSEMPHE KEELLNAAVY RVDALEAELI NTKKALHEAL MKQEELLGYI
601: DRQEEAKYKV

Best Arabidopsis Sequence Match ( AT1G19650.1 )
(BLAST)

001: MSGPLDRFTS PCFSNNGEKR EKKSDFEVSE DEKKTRIGGI LKKKSSKSKF RHSLKRRGSR SIDRTLSLTF EDIHDAEELR YVSEFRQSLI SDHLLPPNLD
101: DYHIMLRFLF ARKFDLGKAK LMWTNMIQWR RDFGTDTILE DFEFPELDEV LRYYPQGYHG VDKEGRPVYI ERLGKVDASK LMQVTTLERY LRYHVKEFEK
201: TITVKFPACC IAAKRHIDSS TTILDVQGLG LKNFTKTARD LIIQLQKIDS DNYPETLHRM FIINAGSGFK LLWGTVKSFL DPKTVSKIHV LGNKYQNKLL
301: EMIDASQLPD FFGGTCTCAD QGGCMRSDKG PWKDSEILKM GRSGGTFCRH AGAFLSSDSQ ISSSDKPTYS LKVSDTSTAK SGSELEEMAS PKTNTNNHVP
401: KLTPVSEYAN GNISPTVLSE YEECVPMVDK VVDVAWQLQE MPNASEGPQY TSSLGKIGSV RHIWSWLTAF FISFFTLLAS LALPQTKEHS QLHSSSVRAE
501: LCDERIARES RPPSPPRSTI TERVIISSVL SRLGDLEKQI ENLHSRKSEM PHEKEELLNA AVYRVDALEA ELITTKKALH EALIRQEELL GYIDRQKEAK
601: CRRKKFCW

Arabidopsis Description

SFH4Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 [Source:UniProtKB/Swiss-Prot;Acc:F4HP88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.