Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29415 | Canola | nucleus | 82.57 | 81.63 |
| Bra025754.1-P | Field mustard | nucleus | 81.58 | 81.31 |
| CDY39363 | Canola | cytosol | 79.11 | 81.25 |
| AT1G75370.2 | Thale cress | cytosol | 71.55 | 65.12 |
| Solyc04g080690.1.1 | Tomato | cytosol | 27.47 | 58.6 |
| AT4G39170.1 | Thale cress | cytosol, nucleus, plastid | 56.74 | 56.19 |
| PGSC0003DMT400009598 | Potato | cytosol | 31.91 | 55.27 |
| AT2G21520.3 | Thale cress | cytosol | 57.57 | 54.95 |
| AT4G36490.1 | Thale cress | plastid | 45.56 | 51.01 |
| AT2G21540.2 | Thale cress | cytosol, nucleus, vacuole | 44.9 | 49.82 |
| AT4G34580.2 | Thale cress | cytosol | 45.07 | 49.46 |
| AT2G18180.1 | Thale cress | plastid | 44.57 | 48.57 |
| AT4G39180.1 | Thale cress | cytosol | 41.78 | 45.85 |
| AT2G16380.1 | Thale cress | cytosol | 41.12 | 45.7 |
| AT3G24840.3 | Thale cress | cytosol | 39.47 | 41.38 |
| AT5G47510.4 | Thale cress | cytosol | 24.51 | 39.52 |
| AT1G55690.4 | Thale cress | nucleus | 39.31 | 38.24 |
| AT5G56160.1 | Thale cress | cytosol | 35.53 | 37.44 |
| AT1G55840.1 | Thale cress | cytosol | 13.65 | 25.54 |
| AT5G47730.1 | Thale cress | cytosol | 13.32 | 23.75 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:838552 | ProteinID:AAF98408.1 | ProteinID:AEE29877.1 |
| EMBL:AK222017 | ArrayExpress:AT1G19650 | EnsemblPlantsGene:AT1G19650 | RefSeq:AT1G19650 | TAIR:AT1G19650 | RefSeq:AT1G19650-TAIR-G |
| EnsemblPlants:AT1G19650.1 | TAIR:AT1G19650.1 | EMBL:AY056251 | Unigene:At.16183 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | UniProt:F4HP88 | GO:GO:0000139 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001251 | InterPro:IPR036865 |
| RefSeq:NP_564092.1 | PFAM:PF00650 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00180 | PFscan:PS50191 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF145 |
| SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | TMHMM:TMhelix | UniParc:UPI0000162E19 |
| SEG:seg | : | : | : | : | : |
Description
SFH4Phosphatidylinositol/phosphatidylcholine transfer protein SFH4 [Source:UniProtKB/Swiss-Prot;Acc:F4HP88]
Coordinates
chr1:-:6796137..6799764
Molecular Weight (calculated)
69283.8 Da
IEP (calculated)
8.452
GRAVY (calculated)
-0.515
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPLDRFTS PCFSNNGEKR EKKSDFEVSE DEKKTRIGGI LKKKSSKSKF RHSLKRRGSR SIDRTLSLTF EDIHDAEELR YVSEFRQSLI SDHLLPPNLD
101: DYHIMLRFLF ARKFDLGKAK LMWTNMIQWR RDFGTDTILE DFEFPELDEV LRYYPQGYHG VDKEGRPVYI ERLGKVDASK LMQVTTLERY LRYHVKEFEK
201: TITVKFPACC IAAKRHIDSS TTILDVQGLG LKNFTKTARD LIIQLQKIDS DNYPETLHRM FIINAGSGFK LLWGTVKSFL DPKTVSKIHV LGNKYQNKLL
301: EMIDASQLPD FFGGTCTCAD QGGCMRSDKG PWKDSEILKM GRSGGTFCRH AGAFLSSDSQ ISSSDKPTYS LKVSDTSTAK SGSELEEMAS PKTNTNNHVP
401: KLTPVSEYAN GNISPTVLSE YEECVPMVDK VVDVAWQLQE MPNASEGPQY TSSLGKIGSV RHIWSWLTAF FISFFTLLAS LALPQTKEHS QLHSSSVRAE
501: LCDERIARES RPPSPPRSTI TERVIISSVL SRLGDLEKQI ENLHSRKSEM PHEKEELLNA AVYRVDALEA ELITTKKALH EALIRQEELL GYIDRQKEAK
601: CRRKKFCW
101: DYHIMLRFLF ARKFDLGKAK LMWTNMIQWR RDFGTDTILE DFEFPELDEV LRYYPQGYHG VDKEGRPVYI ERLGKVDASK LMQVTTLERY LRYHVKEFEK
201: TITVKFPACC IAAKRHIDSS TTILDVQGLG LKNFTKTARD LIIQLQKIDS DNYPETLHRM FIINAGSGFK LLWGTVKSFL DPKTVSKIHV LGNKYQNKLL
301: EMIDASQLPD FFGGTCTCAD QGGCMRSDKG PWKDSEILKM GRSGGTFCRH AGAFLSSDSQ ISSSDKPTYS LKVSDTSTAK SGSELEEMAS PKTNTNNHVP
401: KLTPVSEYAN GNISPTVLSE YEECVPMVDK VVDVAWQLQE MPNASEGPQY TSSLGKIGSV RHIWSWLTAF FISFFTLLAS LALPQTKEHS QLHSSSVRAE
501: LCDERIARES RPPSPPRSTI TERVIISSVL SRLGDLEKQI ENLHSRKSEM PHEKEELLNA AVYRVDALEA ELITTKKALH EALIRQEELL GYIDRQKEAK
601: CRRKKFCW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.