Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030294.1-P | Field mustard | cytosol, nucleus, plastid | 78.28 | 87.91 |
| CDY15887 | Canola | cytosol | 87.96 | 87.8 |
| CDX99586 | Canola | cytosol | 87.96 | 87.64 |
| AT4G39180.1 | Thale cress | cytosol | 73.36 | 72.56 |
| KRH24439 | Soybean | plastid | 39.05 | 65.24 |
| KRH51503 | Soybean | cytosol | 66.61 | 63.7 |
| KRH60806 | Soybean | cytosol | 65.33 | 62.59 |
| AT4G34580.2 | Thale cress | cytosol | 62.77 | 62.09 |
| KRH29420 | Soybean | cytosol, nucleus, plastid | 62.96 | 61.28 |
| AT4G36490.1 | Thale cress | plastid | 58.76 | 59.3 |
| PGSC0003DMT400043532 | Potato | cytosol | 60.04 | 59.07 |
| PGSC0003DMT400001903 | Potato | cytosol, nucleus, plastid | 60.77 | 58.01 |
| Solyc10g053900.1.1 | Tomato | cytosol, plastid | 59.85 | 57.65 |
| Solyc01g109860.2.1 | Tomato | cytosol, nucleus, plastid | 60.04 | 57.32 |
| AT2G18180.1 | Thale cress | plastid | 58.03 | 56.99 |
| AT2G16380.1 | Thale cress | cytosol | 56.2 | 56.31 |
| Solyc11g040280.1.1 | Tomato | cytosol | 60.58 | 55.52 |
| PGSC0003DMT400021690 | Potato | nucleus | 61.13 | 55.46 |
| GSMUA_Achr6P03210_001 | Banana | cytosol | 58.03 | 53.54 |
| TraesCS2D01G335700.2 | Wheat | nucleus | 56.93 | 52.79 |
| GSMUA_Achr5P23630_001 | Banana | cytosol | 57.85 | 52.66 |
| Os10t0122600-01 | Rice | cytosol, nucleus, plastid | 57.3 | 52.51 |
| TraesCS2A01G327200.2 | Wheat | nucleus | 56.57 | 52.45 |
| HORVU2Hr1G082530.1 | Barley | cytosol | 55.29 | 52.33 |
| Os02t0440900-00 | Rice | cytosol | 56.93 | 52.17 |
| TraesCS2B01G354800.2 | Wheat | nucleus | 56.2 | 52.12 |
| Zm00001d016601_P006 | Maize | cytosol | 55.66 | 50.41 |
| OQU85018 | Sorghum | nucleus | 56.39 | 50.41 |
| OQU84321 | Sorghum | cytosol | 51.28 | 49.82 |
| GSMUA_Achr2P14280_001 | Banana | cytosol, nucleus, plastid | 59.12 | 49.09 |
| AT4G39170.1 | Thale cress | cytosol, nucleus, plastid | 54.56 | 48.7 |
| AT2G21520.3 | Thale cress | cytosol | 54.01 | 46.47 |
| TraesCS6A01G097200.1 | Wheat | plastid | 51.64 | 46.17 |
| TraesCS6D01G085200.1 | Wheat | plastid | 51.46 | 45.85 |
| TraesCS6B01G125700.1 | Wheat | plastid | 51.46 | 45.85 |
| Os02t0133200-01 | Rice | plasma membrane | 52.01 | 45.09 |
| HORVU6Hr1G017580.5 | Barley | plastid | 51.64 | 45.06 |
| AT1G19650.1 | Thale cress | cytosol | 49.82 | 44.9 |
| Zm00001d015175_P002 | Maize | plastid | 52.55 | 44.65 |
| AT5G47510.4 | Thale cress | cytosol | 29.93 | 43.5 |
| AT1G75370.2 | Thale cress | cytosol | 50.0 | 41.02 |
| AT3G24840.3 | Thale cress | cytosol | 42.15 | 39.83 |
| AT1G55690.4 | Thale cress | nucleus | 41.61 | 36.48 |
| AT5G56160.1 | Thale cress | cytosol | 36.86 | 35.01 |
| AT1G55840.1 | Thale cress | cytosol | 14.96 | 25.23 |
| AT5G47730.1 | Thale cress | cytosol | 14.78 | 23.75 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:816693 | ProteinID:AAD23650.1 | ProteinID:AAM15309.1 |
| ProteinID:AEC07192.1 | ProteinID:AEC07193.1 | EMBL:AK176420 | ProteinID:ANM61245.1 | ProteinID:ANM61247.1 | ArrayExpress:AT2G21540 |
| EnsemblPlantsGene:AT2G21540 | RefSeq:AT2G21540 | TAIR:AT2G21540 | RefSeq:AT2G21540-TAIR-G | EnsemblPlants:AT2G21540.2 | TAIR:AT2G21540.2 |
| Symbol:ATSFH3 | EMBL:AY057587 | Unigene:At.19824 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom |
| InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | GO:GO:0000003 | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0015031 | GO:GO:0016020 | InterPro:IPR001251 |
| InterPro:IPR036865 | RefSeq:NP_001031389.1 | RefSeq:NP_001318263.1 | RefSeq:NP_001323475.1 | RefSeq:NP_565514.1 | PFAM:PF00650 |
| PFAM:PF03765 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004503 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00180 | PFscan:PS50191 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF144 | UniProt:Q93ZE9 |
| Symbol:SFH3 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI00000A198A |
| SEG:seg | : | : | : | : | : |
Description
SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
Coordinates
chr2:-:9220549..9224432
Molecular Weight (calculated)
62835.7 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.597
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.