Factsheet for AT4G34580.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034638.1-P	Field mustard	cytosol	91.34	93.01
CDX75444	Canola	cytosol	87.91	91.2
CDX69071	Canola	cytosol	87.91	91.2
Bra011544.1-P	Field mustard	cytosol, plastid	80.51	90.1
CDY17469	Canola	cytosol	91.7	88.97
CDX76291	Canola	cytosol	92.06	86.15
CDY45318	Canola	cytosol, plastid	76.17	84.4
Bra017663.1-P	Field mustard	cytosol, plastid	69.13	83.99
AT2G16380.1	Thale cress	cytosol	70.94	71.85
AT2G21540.2	Thale cress	cytosol, nucleus, vacuole	62.09	62.77
KRH24439	Soybean	plastid	34.48	58.23
AT4G39180.1	Thale cress	cytosol	58.12	58.12
KRH51503	Soybean	cytosol	59.21	57.24
PGSC0003DMT400043532	Potato	cytosol	57.04	56.73
AT4G36490.1	Thale cress	plastid	55.42	56.54
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	58.3	56.27
KRH60806	Soybean	cytosol	57.76	55.94
Solyc01g109860.2.1	Tomato	cytosol, nucleus, plastid	57.76	55.75
Solyc10g053900.1.1	Tomato	cytosol, plastid	57.22	55.71
KRH29420	Soybean	cytosol, nucleus, plastid	56.5	55.59
AT2G18180.1	Thale cress	plastid	55.05	54.66
PGSC0003DMT400021690	Potato	nucleus	59.03	54.14
Solyc11g040280.1.1	Tomato	cytosol	58.12	53.85
GSMUA_Achr5P23630_001	Banana	cytosol	56.86	52.33
HORVU2Hr1G082530.1	Barley	cytosol	54.33	51.99
TraesCS2D01G335700.2	Wheat	nucleus	55.23	51.78
TraesCS2A01G327200.2	Wheat	nucleus	55.23	51.78
GSMUA_Achr6P03210_001	Banana	cytosol	55.42	51.68
TraesCS2B01G354800.2	Wheat	nucleus	54.87	51.44
OQU84321	Sorghum	cytosol	52.35	51.42
Os10t0122600-01	Rice	cytosol, nucleus, plastid	55.05	51.0
Os02t0440900-00	Rice	cytosol	54.69	50.67
OQU85018	Sorghum	nucleus	54.87	49.59
Zm00001d016601_P006	Maize	cytosol	54.15	49.59
AT4G39170.1	Thale cress	cytosol, nucleus, plastid	54.15	48.86
GSMUA_Achr2P14280_001	Banana	cytosol, nucleus, plastid	56.86	47.73
AT2G21520.3	Thale cress	cytosol	53.97	46.94
Zm00001d015175_P002	Maize	plastid	53.79	46.2
Os02t0133200-01	Rice	plasma membrane	52.53	46.04
TraesCS6A01G097200.1	Wheat	plastid	50.9	46.0
TraesCS6D01G085200.1	Wheat	plastid	50.72	45.69
TraesCS6B01G125700.1	Wheat	plastid	50.54	45.53
AT1G19650.1	Thale cress	cytosol	49.46	45.07
HORVU6Hr1G017580.5	Barley	plastid	50.9	44.9
AT5G47510.4	Thale cress	cytosol	28.7	42.18
AT1G75370.2	Thale cress	cytosol	49.28	40.87
AT3G24840.3	Thale cress	cytosol	40.97	39.14
AT1G55690.4	Thale cress	nucleus	39.89	35.36
AT5G56160.1	Thale cress	cytosol	35.56	34.14
AT1G55840.1	Thale cress	cytosol	14.62	24.92
AT5G47730.1	Thale cress	cytosol	14.08	22.87

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	EntrezGene:829610	UniProt:A0A178V672	ProteinID:AEE86395.1
EMBL:AJ616026	ProteinID:ANM66125.1	ArrayExpress:AT4G34580	EnsemblPlantsGene:AT4G34580	RefSeq:AT4G34580	TAIR:AT4G34580
RefSeq:AT4G34580-TAIR-G	EnsemblPlants:AT4G34580.2	ProteinID:CAA18837.1	ProteinID:CAB80175.1	ProteinID:CAE82297.1	Symbol:COW1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F4JLE5
GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009932
GO:GO:0009987	GO:GO:0010053	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0030154	GO:GO:0035619	GO:GO:0040007	GO:GO:0048767	GO:GO:0048768	InterPro:IPR001251
InterPro:IPR036865	RefSeq:NP_001328041.1	RefSeq:NP_195184.2	ProteinID:OAP00522.1	PFAM:PF00650	PFAM:PF03765
PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF77	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI00005DC26A	SEG:seg	:	:

Description

SFH1SRH1 [Source:UniProtKB/TrEMBL;Acc:A0A178V672]

Coordinates

chr4:+:16515102..16518746

Molecular Weight (calculated)

63290.4 Da

IEP (calculated)

8.433

GRAVY (calculated)

-0.534

Length

554 amino acids

Sequence
(BLAST)

001: MAETKPEIEM SEEERKIVKI SSLKKKAINA SNRFKNSFKK KGRRSSSRVM SVPIEDDIDA EDLQALDAFR QALILDELLP SKLDDLHMML RFLRARKFDI
101: EKAKQMWSDM IQWRKDFGAD TIIEDFDFEE IDEVMKHYPQ GYHGVDKEGR PVYIERLGQI DANKLLQVTT MDRYVKYHVK EFEKTFKVKF PSCSVAANKH
201: IDQSTTILDV QGVGLKNFSK SARELLQRLC KIDNENYPET LNRMFIINAG SGFRLLWSTV KSFLDPKTTA KIHVLGNKYH SKLLEVIDAS ELPEFFGGAC
301: TCEDKGGCMR SDKGPWNDPE VLKIAINREA KCSPISEDEH KHVDQGRSTS GFESLERIKK KTDEDNVYEK QIATIDKSMD MAWLAKTQKA ENFPISKGLE
401: CYVRKGAPKK GDGLLVGGVM AFVMGIVAMV RLSKDVPRKL TEAALYGNSV CYEESTKSKQ NQGQFAAPVS SSEYMLMVKR MAELEDKCMF LDLKPAHVES
501: EKEEKLQAAL NRVQVLEQEL TETKKALEEA LVSQKEILAY IEKKKKKKKL FFGF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.