Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36490.1 | EER91265 | AT4G26630.1 | 25387881 |
| AT4G36490.1 | OQU91413 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015175_P002 | Maize | plastid | 93.79 | 82.02 |
| Os02t0133200-01 | Rice | plasma membrane | 82.98 | 74.05 |
| TraesCS6A01G097200.1 | Wheat | plastid | 78.9 | 72.59 |
| TraesCS6B01G125700.1 | Wheat | plastid | 78.55 | 72.03 |
| TraesCS6D01G085200.1 | Wheat | plastid | 77.66 | 71.22 |
| HORVU6Hr1G017580.5 | Barley | plastid | 78.37 | 70.38 |
| KRH76738 | Soybean | plastid | 49.29 | 57.8 |
| KRH28724 | Soybean | plastid | 49.11 | 57.35 |
| GSMUA_Achr6P03210_001 | Banana | cytosol | 60.28 | 57.24 |
| GSMUA_Achr5P23630_001 | Banana | cytosol | 59.93 | 56.15 |
| AT4G36490.1 | Thale cress | plastid | 53.55 | 55.62 |
| KRH08168 | Soybean | plastid | 53.9 | 54.77 |
| CDX75444 | Canola | cytosol | 51.42 | 54.31 |
| CDX89709 | Canola | cytosol, mitochondrion | 43.62 | 54.07 |
| CDX69071 | Canola | cytosol | 51.06 | 53.93 |
| KRH69861 | Soybean | plastid | 53.01 | 53.87 |
| KRH24439 | Soybean | plastid | 31.21 | 53.66 |
| OQU85018 | Sorghum | nucleus | 57.62 | 53.02 |
| AT2G18180.1 | Thale cress | plastid | 52.3 | 52.87 |
| Bra034638.1-P | Field mustard | cytosol | 50.89 | 52.76 |
| Bra011544.1-P | Field mustard | cytosol, plastid | 46.28 | 52.73 |
| AT4G34580.2 | Thale cress | cytosol | 51.42 | 52.35 |
| PGSC0003DMT400043532 | Potato | cytosol | 51.6 | 52.24 |
| GSMUA_Achr2P14280_001 | Banana | cytosol, nucleus, plastid | 60.11 | 51.36 |
| AT2G21540.2 | Thale cress | cytosol, nucleus, vacuole | 49.82 | 51.28 |
| CDY45318 | Canola | cytosol, plastid | 45.39 | 51.2 |
| PGSC0003DMT400001903 | Potato | cytosol, nucleus, plastid | 51.95 | 51.05 |
| Solyc10g053900.1.1 | Tomato | cytosol, plastid | 51.42 | 50.97 |
| Solyc01g109860.2.1 | Tomato | cytosol, nucleus, plastid | 51.77 | 50.87 |
| CDY12126 | Canola | cytosol | 48.23 | 50.84 |
| CDY15887 | Canola | cytosol | 49.29 | 50.64 |
| CDY17469 | Canola | cytosol | 51.24 | 50.61 |
| CDX99586 | Canola | cytosol | 49.29 | 50.55 |
| Solyc11g040280.1.1 | Tomato | cytosol | 53.55 | 50.5 |
| CDX90317 | Canola | cytosol | 48.05 | 50.47 |
| Bra010699.1-P | Field mustard | cytosol | 47.87 | 50.28 |
| KRH51503 | Soybean | cytosol | 51.06 | 50.26 |
| KRH29420 | Soybean | cytosol, nucleus, plastid | 50.0 | 50.09 |
| PGSC0003DMT400021690 | Potato | nucleus | 53.19 | 49.67 |
| KRH60806 | Soybean | cytosol | 50.35 | 49.65 |
| Bra017663.1-P | Field mustard | cytosol, plastid | 40.07 | 49.56 |
| AT4G39180.1 | Thale cress | cytosol | 48.4 | 49.28 |
| CDX76291 | Canola | cytosol | 51.42 | 48.99 |
| Bra030294.1-P | Field mustard | cytosol, nucleus, plastid | 42.02 | 48.57 |
| AT2G16380.1 | Thale cress | cytosol | 46.81 | 48.26 |
| VIT_04s0023g02400.t01 | Wine grape | cytosol, nucleus, plastid | 45.21 | 47.57 |
| VIT_03s0038g04480.t01 | Wine grape | cytosol | 51.95 | 47.26 |
| CDX69225 | Canola | mitochondrion | 49.47 | 45.96 |
| KXG29407 | Sorghum | cytosol, nucleus, plastid | 50.53 | 45.53 |
| KXG22454 | Sorghum | cytosol | 44.5 | 40.55 |
| KXG33199 | Sorghum | cytosol | 43.44 | 40.5 |
| EER96946 | Sorghum | cytosol, nucleus, plastid | 40.43 | 38.06 |
| OQU80990 | Sorghum | cytosol | 39.54 | 36.74 |
| KXG40069 | Sorghum | nucleus | 40.6 | 36.35 |
| KXG30865 | Sorghum | cytosol | 39.36 | 35.98 |
| OQU88968 | Sorghum | cytosol | 25.35 | 34.79 |
| EER96447 | Sorghum | cytosol | 13.48 | 22.69 |
| EES04709 | Sorghum | cytosol | 12.94 | 22.32 |
| EER90026 | Sorghum | cytosol | 12.77 | 21.82 |
| CDY02262 | Canola | cytosol, plastid | 47.34 | 18.53 |
| Bra013077.1-P | Field mustard | cytosol, plastid | 47.34 | 18.3 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | UniProt:A0A1Z5RL78 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | InterPro:IPR001251 | InterPro:IPR036865 | EnsemblPlants:OQU84321 |
| ProteinID:OQU84321 | ProteinID:OQU84321.1 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 | PFscan:PS50191 |
| PANTHER:PTHR23324 | PANTHER:PTHR23324:SF55 | SMART:SM00516 | SMART:SM01100 | EnsemblPlantsGene:SORBI_3004G031900 | SUPFAM:SSF46938 |
| SUPFAM:SSF52087 | UniParc:UPI000B8B9886 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:2581116..2583897
Molecular Weight (calculated)
63340.3 Da
IEP (calculated)
6.595
GRAVY (calculated)
-0.515
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRSSKVMS VSIEDVRDAE EMKQVDAFRQ TLVLEELLPA RHDDYHMMLR FLKARKFDID KSKQMWSDML QWRKEFGADT IIDDFVFEEM DQVLEHYPQG
101: HHGVDKDGRP VYMEKLGQID TTKLLQVTSM DRYVQYHVRE FERAFAVKFP ACSIAAKKHV DQSTTILDVS GVGYKNFNKA ARDLIGRLQK IDGDNYPETL
201: CRMFIINAGQ GFRLLWNTVK SFLDPKTTAK IHVLGNKYQS KLLEVIDASE LPEFLGGTCN CEGGCMRSDK GPWKDPEIFK MVQCGMGRCG MNSADPHDAD
301: EKLITEDATV PVPKKQDSMR RNAGDSPKVA RDKIEHPQMS PLHEMKTAND PAPPAKDNFD GGGLFPGGMD KGGMDFNWSG EVSEEKLQIA RDMYAQLPDA
401: YKQGDAGDRQ VVSGFMALVM GVVAMFRVGK IAPKRAMDAA MGIATMEAMA KKTRQMQMQQ QMQLGGPDAV VVSAAQYQAL VKRLDDLEGK VAALAAKPPE
501: VPPELEESLK AAAARVEALE TELDATKKLL ETSNGQQEEV LAYIEKKKKK RGMFCLQQQN PFRW
101: HHGVDKDGRP VYMEKLGQID TTKLLQVTSM DRYVQYHVRE FERAFAVKFP ACSIAAKKHV DQSTTILDVS GVGYKNFNKA ARDLIGRLQK IDGDNYPETL
201: CRMFIINAGQ GFRLLWNTVK SFLDPKTTAK IHVLGNKYQS KLLEVIDASE LPEFLGGTCN CEGGCMRSDK GPWKDPEIFK MVQCGMGRCG MNSADPHDAD
301: EKLITEDATV PVPKKQDSMR RNAGDSPKVA RDKIEHPQMS PLHEMKTAND PAPPAKDNFD GGGLFPGGMD KGGMDFNWSG EVSEEKLQIA RDMYAQLPDA
401: YKQGDAGDRQ VVSGFMALVM GVVAMFRVGK IAPKRAMDAA MGIATMEAMA KKTRQMQMQQ QMQLGGPDAV VVSAAQYQAL VKRLDDLEGK VAALAAKPPE
501: VPPELEESLK AAAARVEALE TELDATKKLL ETSNGQQEEV LAYIEKKKKK RGMFCLQQQN PFRW
001: MTLIQDAELK PRMGSFKKRS SSKNLRYSMT KRRRSSKVMS VEIIEDVHDA EELKAVDAFR QSLILDELLP EKHDDYHMML RFLKARKFDL EKTKQMWTEM
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW
101: LRWRKEFGAD TVMEEFDFKE IDEVLKYYPQ GHHGVDKEGR PVYIERLGLV DSTKLMQVTT MDRYVNYHVM EFERTFNVKF PACSIAAKKH IDQSTTILDV
201: QGVGLKNFNK AARDLITRLQ KVDGDNYPET LNRMFIINAG SGFRMLWNTV KSFLDPKTTA KIHVLGNKYQ SKLLEIIDES ELPEFLGGSC TCADNGGCMR
301: SDKGPWKNPE IMKRVHNGDH KCSKGSQAEN SGEKTIPEED DSTTEPASEE EKASKEVEIV PAAHPAWNMP EAHKFSLSKK EVYAIQEACN NATTEGGRSP
401: IFTGVMALVM GVVTMIKVTK NVPRKLTEST LYSSPVYCDD ASMNKSAMQS EKMTVPAISG EDFMAIMKRM AELEQKVTVL SAQPTVMPPD KEEMLNAAIS
501: RSNVLEQELA ATKKALDDSL GRQEELVAYI EKKKKKKKLF NYW
Arabidopsis Description
SFH12Phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [Source:UniProtKB/Swiss-Prot;Acc:Q94A34]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.