Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G035250.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36490.1 | HORVU4Hr1G035250.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G354800.2 | Wheat | nucleus | 96.37 | 94.42 |
| TraesCS2D01G335700.2 | Wheat | nucleus | 95.34 | 93.4 |
| TraesCS2A01G327200.2 | Wheat | nucleus | 95.16 | 93.23 |
| Os10t0122600-01 | Rice | cytosol, nucleus, plastid | 81.87 | 79.26 |
| Os02t0440900-00 | Rice | cytosol | 80.31 | 77.76 |
| OQU85018 | Sorghum | nucleus | 78.93 | 74.55 |
| Zm00001d016601_P006 | Maize | cytosol | 77.72 | 74.38 |
| GSMUA_Achr5P23630_001 | Banana | cytosol | 63.39 | 60.96 |
| GSMUA_Achr6P03210_001 | Banana | cytosol | 61.49 | 59.93 |
| HORVU1Hr1G088100.1 | Barley | cytosol | 16.41 | 59.01 |
| KRH28724 | Soybean | plastid | 47.67 | 57.14 |
| CDX75444 | Canola | cytosol | 52.16 | 56.55 |
| CDX69071 | Canola | cytosol | 51.81 | 56.18 |
| KRH76738 | Soybean | plastid | 46.63 | 56.13 |
| KRH24439 | Soybean | plastid | 31.43 | 55.49 |
| AT2G21540.2 | Thale cress | cytosol, nucleus, vacuole | 52.33 | 55.29 |
| CDX99586 | Canola | cytosol | 52.5 | 55.27 |
| CDY15887 | Canola | cytosol | 52.33 | 55.19 |
| Bra034638.1-P | Field mustard | cytosol | 51.3 | 54.6 |
| Bra030294.1-P | Field mustard | cytosol, nucleus, plastid | 45.94 | 54.51 |
| AT4G34580.2 | Thale cress | cytosol | 51.99 | 54.33 |
| AT4G36490.1 | Thale cress | plastid | 50.95 | 54.33 |
| GSMUA_Achr2P14280_001 | Banana | cytosol, nucleus, plastid | 61.83 | 54.24 |
| PGSC0003DMT400043532 | Potato | cytosol | 52.16 | 54.22 |
| HORVU7Hr1G037200.1 | Barley | nucleus | 20.03 | 54.21 |
| Bra011544.1-P | Field mustard | cytosol, plastid | 46.29 | 54.14 |
| CDY45318 | Canola | cytosol, plastid | 46.63 | 54.0 |
| CDY12126 | Canola | cytosol | 49.74 | 53.83 |
| CDX90317 | Canola | cytosol | 49.57 | 53.45 |
| Bra010699.1-P | Field mustard | cytosol | 49.4 | 53.26 |
| Solyc10g053900.1.1 | Tomato | cytosol, plastid | 52.33 | 53.25 |
| Bra017663.1-P | Field mustard | cytosol, plastid | 41.8 | 53.07 |
| KRH08168 | Soybean | plastid | 50.78 | 52.97 |
| CDX89709 | Canola | cytosol, mitochondrion | 41.62 | 52.97 |
| AT4G39180.1 | Thale cress | cytosol | 50.6 | 52.89 |
| KRH69861 | Soybean | plastid | 50.6 | 52.79 |
| KRH51503 | Soybean | cytosol | 51.81 | 52.36 |
| AT2G18180.1 | Thale cress | plastid | 50.43 | 52.33 |
| HORVU3Hr1G112740.3 | Barley | nucleus | 20.21 | 52.23 |
| CDY17469 | Canola | cytosol | 51.47 | 52.19 |
| KRH29420 | Soybean | cytosol, nucleus, plastid | 50.6 | 52.04 |
| KRH60806 | Soybean | cytosol | 51.12 | 51.75 |
| Solyc01g109860.2.1 | Tomato | cytosol, nucleus, plastid | 51.3 | 51.74 |
| PGSC0003DMT400001903 | Potato | cytosol, nucleus, plastid | 51.3 | 51.74 |
| HORVU6Hr1G017580.5 | Barley | plastid | 55.79 | 51.43 |
| HORVU7Hr1G040650.2 | Barley | cytosol, nucleus, plastid | 19.52 | 50.45 |
| VIT_04s0023g02400.t01 | Wine grape | cytosol, nucleus, plastid | 46.63 | 50.37 |
| CDX76291 | Canola | cytosol | 51.47 | 50.34 |
| VIT_03s0038g04480.t01 | Wine grape | cytosol | 53.89 | 50.32 |
| Solyc11g040280.1.1 | Tomato | cytosol | 51.81 | 50.17 |
| PGSC0003DMT400021690 | Potato | nucleus | 52.33 | 50.17 |
| AT2G16380.1 | Thale cress | cytosol | 47.32 | 50.09 |
| CDX69225 | Canola | mitochondrion | 45.94 | 43.82 |
| HORVU6Hr1G017570.5 | Barley | cytosol, nucleus, plastid | 51.64 | 40.13 |
| HORVU6Hr1G071770.19 | Barley | cytosol | 42.31 | 39.64 |
| HORVU1Hr1G091860.1 | Barley | cytosol | 10.71 | 38.04 |
| HORVU3Hr1G065830.17 | Barley | cytosol, mitochondrion, plastid | 43.87 | 37.97 |
| HORVU7Hr1G048880.11 | Barley | mitochondrion | 41.28 | 36.94 |
| HORVU1Hr1G078880.9 | Barley | cytosol, nucleus | 46.11 | 36.63 |
| HORVU2Hr1G111160.14 | Barley | mitochondrion | 24.87 | 36.55 |
| HORVU5Hr1G052230.2 | Barley | cytosol | 13.99 | 24.11 |
| HORVU7Hr1G090330.11 | Barley | cytosol, nucleus, plastid | 13.64 | 23.24 |
| HORVU6Hr1G032510.1 | Barley | cytosol, nucleus, peroxisome | 13.64 | 22.97 |
| CDY02262 | Canola | cytosol, plastid | 47.32 | 19.01 |
| Bra013077.1-P | Field mustard | cytosol, plastid | 47.32 | 18.78 |
Protein Annotations
| Gene3D:1.10.8.20 | Gene3D:3.40.525.10 | MapMan:35.1 | UniProt:A0A287INH9 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | EnsemblPlantsGene:HORVU2Hr1G082530 | EnsemblPlants:HORVU2Hr1G082530.1 | InterPro:IPR001251 |
| InterPro:IPR036865 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 | PFscan:PS50191 | PANTHER:PTHR23324 |
| PANTHER:PTHR23324:SF137 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI000B486D0A |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:598705890..598710758
Molecular Weight (calculated)
64919.1 Da
IEP (calculated)
6.879
GRAVY (calculated)
-0.500
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVLSGPPE HHLSSALDTH YEEKRKSNVE YSEDEKKAMI VSLKKKAMNA SQKLRHSMKK GRRSSKVMSI SIEDERDPEE VQAVDAFRQL LVLEELLPSQ
101: HDDYHMMLRF LKARKFDVEK SKQMWADMLQ WRKEFGTDTL LEGFEFEEAD KVAECYPQGY HGVDKEGRPV YIERLGQIDV NKLMQVTTME RFVKNHVKEF
201: EKNFADKFPA CSVAAKRHID QSTTILDVQG VGMKQFSKAA RDLIGQLQKI DGDNYPETLC RMFIINAGQG FRLLWSTVKS FLDPKTTAKI HVLGNKYQSK
301: LLEVIDASEL PEFFGGTCQC QGGCMTADKG PWKNPEVMKM VQSGAGRCGK LNLESLDTGD KMISADNTVY TKKQDPLTGQ DDWRNPARAQ IEHPQLSPVH
401: EDLHPALFPN PGSPYSCDVP MVEKAIDAIC KSHGLTDDNL ALTKAVANAS NASNPPMMGG IMALVMSIAT MLRLSRNMPK KVIGAAIGAQ STQKVQAQQQ
501: SKMSAEAEYA VSAKRFADLE EKIIALLAKP AEMPADKEEL LKAATSRVAA LEEELALTNK ALRESLERQR EIIEYIEKK
101: HDDYHMMLRF LKARKFDVEK SKQMWADMLQ WRKEFGTDTL LEGFEFEEAD KVAECYPQGY HGVDKEGRPV YIERLGQIDV NKLMQVTTME RFVKNHVKEF
201: EKNFADKFPA CSVAAKRHID QSTTILDVQG VGMKQFSKAA RDLIGQLQKI DGDNYPETLC RMFIINAGQG FRLLWSTVKS FLDPKTTAKI HVLGNKYQSK
301: LLEVIDASEL PEFFGGTCQC QGGCMTADKG PWKNPEVMKM VQSGAGRCGK LNLESLDTGD KMISADNTVY TKKQDPLTGQ DDWRNPARAQ IEHPQLSPVH
401: EDLHPALFPN PGSPYSCDVP MVEKAIDAIC KSHGLTDDNL ALTKAVANAS NASNPPMMGG IMALVMSIAT MLRLSRNMPK KVIGAAIGAQ STQKVQAQQQ
501: SKMSAEAEYA VSAKRFADLE EKIIALLAKP AEMPADKEEL LKAATSRVAA LEEELALTNK ALRESLERQR EIIEYIEKK
001: MTDTMSAHMD RHNKLDYDGS EDEKKTKLCS LKKKAINASN KFKHSFTKRT RRNSRVMSVS IVDDIDLEEL QAVDAFRQAL ILDELLPSKH DDHHMMLRFL
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF
101: RARKFDLEKA KQMWTDMIHW RKEFGVDTIM EDFDFKEIDE VLKYYPQGYH GVDKDGRPVY IERLGQVDAT KLMQVTTIDR YVKYHVREFE KTFNIKLPAC
201: SIAAKKHIDQ STTILDVQGV GLKSFSKAAR DLLQRIQKID SDNYPETLNR MFIINAGSGF RLLWSTVKSF LDPKTTAKIH VLGNKYQSKL LEIIDSNELP
301: EFLGGNCTCA DKGGCMRSDK GPWNDPDIFK MVQNGEGKCP RKTLSNIEEK TISVDENTTM KSDSFAKNKF DAENTKFIPM IDKTVNASTW PTNLHKSNYP
401: EPEDLYSAVK PSQRRGGEGY LFGGVMSLVM GLMTVVRLTK NMPRKLTEAA IYGGEVDKAE TTMVSNQEYM SMVKRMAELE EKCRSLDNQP AAFSPEKEQI
501: LTAALSRVDE LELQLAQTKK TLEETMATQH VIMAYIDKKK KKKKFFGF
Arabidopsis Description
SFH3Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]
SUBAcon: [vacuole,nucleus,cytosol]
SUBAcon: [vacuole,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.