Factsheet for PGSC0003DMT400057292

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066090.2.1	Tomato	nucleus	97.41	97.1
Zm00001d039981_P001	Maize	cytosol	14.08	70.73
PGSC0003DMT400022405	Potato	cytosol, nucleus	64.56	68.56
HORVU1Hr1G088100.1	Barley	cytosol	17.8	68.32
VIT_19s0015g01160.t01	Wine grape	cytosol	66.18	65.86
Zm00001d031251_P001	Maize	cytosol, mitochondrion	13.59	65.12
HORVU7Hr1G037200.1	Barley	nucleus	21.84	63.08
KRH62508	Soybean	cytosol	61.49	61.29
KRH56402	Soybean	cytosol	61.16	60.97
HORVU7Hr1G040650.2	Barley	cytosol, nucleus, plastid	22.01	60.71
KRH45371	Soybean	cytosol	43.04	60.45
AT1G55690.4	Thale cress	nucleus	60.84	60.16
HORVU3Hr1G112740.3	Barley	nucleus	21.68	59.82
Zm00001d012531_P001	Maize	mitochondrion	12.62	59.54
KRH07662	Soybean	cytosol	59.39	59.29
CDY42378	Canola	nucleus	59.71	57.39
CDY10540	Canola	cytosol, nucleus, plastid	59.55	57.23
CDY51073	Canola	mitochondrion, nucleus	46.93	56.75
CDY50018	Canola	vacuole	58.58	56.65
Bra030841.1-P	Field mustard	nucleus	54.53	56.26
GSMUA_Achr4P09770_001	Banana	cytosol	39.97	54.17
GSMUA_Achr7P06190_001	Banana	cytosol	49.84	53.38
Zm00001d043774_P001	Maize	cytosol	7.28	52.94
GSMUA_Achr3P11960_001	Banana	cytosol, plastid	50.32	50.98
GSMUA_Achr5P04200_001	Banana	plastid	51.13	50.56
KXG40069	Sorghum	nucleus	51.29	50.32
GSMUA_Achr3P04130_001	Banana	nucleus	50.65	50.24
Os08t0341700-01	Rice	nucleus	51.29	49.76
TraesCS2B01G533900.1	Wheat	nucleus	50.16	49.21
TraesCS2D01G506400.1	Wheat	nucleus	50.0	48.82
Os02t0721800-01	Rice	cytosol	47.41	47.88
HORVU6Hr1G071770.19	Barley	cytosol	47.57	47.57
TraesCS6A01G284800.1	Wheat	cytosol	47.57	47.42
TraesCS6B01G313500.1	Wheat	cytosol	47.41	47.33
TraesCS6D01G265200.1	Wheat	cytosol	47.41	47.33
GSMUA_Achr8P24430_001	Banana	endoplasmic reticulum	50.49	47.27
Os08t0497300-01	Rice	cytosol, plastid	45.95	47.02
Zm00001d017876_P018	Maize	cytosol	46.93	47.0
KXG30865	Sorghum	cytosol	46.6	46.68
OQU80990	Sorghum	cytosol	45.63	46.46
PGSC0003DMT400009598	Potato	cytosol	26.38	46.44
Zm00001d051674_P037	Maize	cytosol	45.79	46.24
EER96946	Sorghum	cytosol, nucleus, plastid	44.66	46.08
TraesCS7D01G238000.2	Wheat	cytosol	44.66	45.62
Zm00001d035770_P002	Maize	cytosol, endoplasmic reticulum	21.68	45.12
Zm00001d005995_P003	Maize	nucleus	43.69	45.08
Zm00001d050131_P002	Maize	cytosol	46.12	44.6
Os09t0481100-01	Rice	nucleus	44.01	44.52
Zm00001d014589_P001	Maize	cytosol	6.96	44.33
PGSC0003DMT400045517	Potato	cytosol	42.39	44.18
Zm00001d045670_P001	Maize	cytosol	13.43	44.15
Zm00001d045718_P001	Maize	cytosol	17.64	43.08
HORVU1Hr1G091860.1	Barley	cytosol	11.16	42.33
Zm00001d031316_P020	Maize	cytosol	44.17	42.33
PGSC0003DMT400001942	Potato	cytosol	42.72	42.24
HORVU7Hr1G048880.11	Barley	mitochondrion	43.53	41.58
TraesCS7B01G135600.2	Wheat	plastid	44.5	41.23
TraesCS7A01G240000.3	Wheat	endoplasmic reticulum, plastid	44.66	41.13
PGSC0003DMT400043545	Potato	cytosol	42.72	41.06
Zm00001d008240_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	12.95	40.4
PGSC0003DMT400043532	Potato	cytosol	36.41	40.4
PGSC0003DMT400001903	Potato	cytosol, nucleus, plastid	36.73	39.55
Zm00001d052840_P016	Maize	plastid	45.95	39.17
PGSC0003DMT400021690	Potato	nucleus	37.05	37.91
Zm00001d010393_P001	Maize	plastid	21.52	36.54
Zm00001d037983_P001	Maize	cytosol	13.11	34.32
Bra038012.1-P	Field mustard	cytosol	58.41	34.12
Zm00001d047488_P001	Maize	nucleus	7.93	30.62
PGSC0003DMT400057025	Potato	cytosol	13.75	25.22
PGSC0003DMT400034789	Potato	cytosol	13.27	24.26
Zm00001d035370_P003	Maize	plastid	13.75	20.83
Zm00001d005778_P001	Maize	plastid	7.28	16.01

Protein Annotations

Gene3D:1.10.8.20	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:IPR001251	InterPro:IPR036865	UniProt:M1C0S2	PFAM:PF00650
PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG401022253	PGSC:PGSC0003DMG401022253	EnsemblPlants:PGSC0003DMT400057292	PFscan:PS50191	PANTHER:PTHR23324
PANTHER:PTHR23324:SF84	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002954B1F
SEG:seg	:	:	:	:	:

Description

Transporter [Source:PGSC_GENE;Acc:PGSC0003DMG401022253]

Coordinates

chr7:+:56031960..56038856

Molecular Weight (calculated)

71188.9 Da

IEP (calculated)

7.862

GRAVY (calculated)

-0.587

Length

618 amino acids

Sequence
(BLAST)

001: MSEWLDAYDD VRERRSDFEV SEDERRRSRI GTFKKKALHA SNKFTHSLKK RGKRKVDYRF PSVSIEDVRD AKEENAVCEL RQRLLERNLL PSRHDDYHTL
101: LRFLKARDLN VEKTIPMWEE MLNWRKEFGA DTILQDFDFE ELEEVLQFYP QGYHGVDREG RPVYIERLGQ ANPNKLMRIT TIDRYLKYHV QEFERALHEK
201: FPACSVAAKK RICTTTTILD VQGLGIKNFT RTAASLLAAM AKIDNSYYPE TLHRMFIVNA GPGFKKMLWP AAQKFLDAKT IAKIQVLDPK SLGKLHEVID
301: PSQLPDFLGG SCTCSDEGGC LRSNKGPWSD PEVMKLVYNV EATTVKEISR KIGDQRKIES YIQIRPSKGR SRDTSTSDSV LDADDLCSPI RGSSSSILRL
401: TPVDEEVRSS DSTAYCSCDD EFSLGDRGVT NEHGLLHWQE QSPVSNPMNR STNTLPHSGG TWAINWCERI QEKILSSCFS CLERKLIPFI LKIFAFIRSL
501: PFEYWRKQTN VFPTNALEER QGSSSSINDE AVQRVREIHP CMQRLHKLEN LLEEINKKPA EIPAEKDRML HQSLNRIKSV EVDLEKTKRV LHATVLKQLE
601: ITELVDNLKE SSFHVSIT

Best Arabidopsis Sequence Match ( AT1G55690.3 )
(BLAST)

001: MSGVEEISTL DEFRERRSDF EISEDERRRS KIGNLKKKAI NASTKFTHSL KKRGKRKIDY RVPAVSIEDV RDEKEESVVL EFRRKLLERD LLPPRHDEYH
101: TLLRFLKARD LNIEKTTQLW EEMLRWRKEY GTDTILEDFD FEELEEVLQY YPQGYHGVDK EGRPVYIERL GKAHPSKLMR ITTIDRYLKY HVQEFERALQ
201: EKFPACSIAA KRRICSTTTI LDVQGLGIKN FTPTAANLVA AMSKIDNSYY PETLHRMYIV NAGTGFKKML WPAAQKFLDA KTIAKIHVLE PKSLFKLHEV
301: IDSSQLPEFL GGSCSCFGDG GGCLRSNKGP WNDPEIMKLI YHGESSLFRQ STRKLTDPHY SSSYISIHPS KAIQAETSAA ESISCSDVPS SPTGRLCSAS
401: SHVNSAYEEA RASDVNGYYS CDDKFAIPDK ATNRKGQERQ SQYQMRELNA TTIGLKCETS SPGAPIIRWL HDLRVMIDKI KCENLAKRLL SLMLKLAAVF
501: RYTPLELLRS QTTVSPSSLT EDDSRCSLIS PPPREPTMKD RILPCLERIQ KLEKSYEDIR NKPVAIPVEK ERMLMDSLDR IKSVEFDLDK TKRLLHATVM
601: KQMEITEMLQ NIRDSQLHVR T

Arabidopsis Description

SFH13Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Source:UniProtKB/Swiss-Prot;Acc:Q501H5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.