CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH17509
KRH39114
KRH41782
KRH48600
KRH60482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	KRH39114	AT1G18040.1	20706207
AT4G30825.1	KRH41782	AT1G18040.1	20706207
AT4G30825.1	KRH48600	AT1G18040.1	20706207
AT4G30825.1	KRH60482	AT1G18040.1	20706207
AT4G30825.1	KRH17509	AT1G20480.1	20706207
AT4G30825.1	KRH39114	AT1G73690.1	20706207
AT4G30825.1	KRH41782	AT1G73690.1	20706207
AT4G30825.1	KRH48600	AT1G73690.1	20706207
AT4G30825.1	KRH60482	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P04630_001	Banana	cytosol	48.59	61.12
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	61.01	57.89
CDX68697	Canola	cytosol	57.73	56.09
AT4G30825.1	Thale cress	cytosol, plastid	58.55	55.31
Bra011225.1-P	Field mustard	cytosol	56.79	55.18
CDY28218	Canola	cytosol	56.79	55.18
PGSC0003DMT400029152	Potato	cytosol	58.31	53.15
Solyc07g005950.2.1	Tomato	cytosol	58.08	51.94
TraesCS5D01G229900.1	Wheat	plastid	51.17	47.09
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	51.05	46.88
HORVU5Hr1G064130.1	Barley	plastid	51.05	46.83
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	50.82	46.67
Os09t0423300-01	Rice	mitochondrion	51.17	45.43
EES13584	Sorghum	mitochondrion	49.18	44.59
Zm00001d024409_P001	Maize	plastid	49.41	43.91
KRH42711	Soybean	plastid	18.62	14.74
KRH27784	Soybean	plastid	17.33	9.95

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100804693	MapMan:35.1	EMBL:ACUP02002610	EnsemblPlantsGene:GLYMA_04G155800	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005675	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006357	GO:GO:0006464	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KK74
EnsemblPlants:KRH63118	ProteinID:KRH63118	ProteinID:KRH63118.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR12683	PANTHER:PTHR12683:SF10	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233A07B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:36426894..36429692

Molecular Weight (calculated)

97480.3 Da

IEP (calculated)

8.242

GRAVY (calculated)

-0.221

Length

854 amino acids

Sequence
(BLAST)

001: MASFFRFSLS LDASDSLQSN LHPPFKIKTK LIEANLNSKP QLRASKPTPK PNRQHPKTKP SYLPKNTEKQ KLFFSRDADV DFSPELSTEH CNAILKRLEA
101: SAAAADKTLS FFERMRATGK LERNAAAYNV MLRFLSRRQD WEGAEKLIYE MKGSELISCN AFNTLIYACC KQSLVQLGTK WFRMMLDCGV VPNVATIGML
201: MGLYRKGWNL EEAEFAFSRM RGFRIVCESA YSSMITIYTR LRLYEKAEGV IELMRKDEVV PNLENWLVML NAYSQQGKLG DAERVLEAMQ EAGFSDNIVA
301: FNTMITGFGK ARRMDAAQRL FMRITRCLEV DPDETTYRSM IEGWGRADNY EYATRYYKEL KQMGFKPSSS NLFTLIKLEA NYGDDEGAVG ILDDMVDCGC
401: HYASIIGTLL HVYERAAKVH KVPRLLKGSF YQHVLVNQSS CSTLVMAYVK HRLVEDALKV LNDKKWQDPR YEDNLYHLLI CSCKEAGLLE DAVKIYSRMP
501: KSDDNPNMHI ACTMIDIYSV MGLFKDAEVL YLKLKSSGVA LDMIAFSIVV RMYVKAGALK DACAVLDAID MRPDIVPDKF LLCDMLRIYQ RCNMATKLAD
601: LYYKISKSRE DWDQELYNCV LNCCAQALPV DELSRLFDEM VQHGFAPSTI TFNVMLDVFG KAKLFNKVWR LYCMAKKQGL VDVITYNTII AAYGKNKDFN
701: NMSSTVQKME FDGFSVSLEA YNSMLDAYGK DGQMETFRSV LQKMKDSNCA SDHYTYNTLI NIYGEQGWIN EVANVLTELK ECGLRPDLCS YNTLIKAYGI
801: AGMVAEAVGL IKEMRKNGIE PDKKSYTNLI TALRRNDKFL EAVKWSLWMK QMKI

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.