Factsheet for VIT_16s0013g02120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0006g02280.t01
VIT_18s0001g00280.t01
VIT_18s0001g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	VIT_14s0006g02280.t01	AT1G18040.1	20706207
AT4G30825.1	VIT_18s0001g00280.t01	AT1G20480.1	20706207
AT4G30825.1	VIT_18s0001g00290.t01	AT1G20480.1	20706207
AT4G30825.1	VIT_14s0006g02280.t01	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P04630_001	Banana	cytosol	49.0	64.95
KRH63118	Soybean	plastid	57.89	61.01
PGSC0003DMT400029152	Potato	cytosol	62.56	60.09
AT4G30825.1	Thale cress	cytosol, plastid	60.0	59.73
CDX68697	Canola	cytosol	58.0	59.39
CDY28218	Canola	cytosol	58.0	59.39
Bra011225.1-P	Field mustard	cytosol	57.78	59.16
Solyc07g005950.2.1	Tomato	cytosol	62.56	58.95
TraesCS5D01G229900.1	Wheat	plastid	51.56	50.0
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	51.67	50.0
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	51.56	49.89
HORVU5Hr1G064130.1	Barley	plastid	51.22	49.52
Os09t0423300-01	Rice	mitochondrion	51.11	47.82
EES13584	Sorghum	mitochondrion	49.89	47.66
Zm00001d024409_P001	Maize	plastid	49.67	46.51
VIT_16s0039g02130.t01	Wine grape	plastid	19.22	16.15
VIT_16s0039g02570.t01	Wine grape	plastid	19.33	11.74

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100267412	wikigene:100267412	MapMan:35.1	ProteinID:CBI38673	ProteinID:CBI38673.3
UniProt:D7U7F9	EMBL:FN596738	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005675
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100267412	wikigene:LOC100267412	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR12683	PANTHER:PTHR12683:SF10	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001BE4E0D	ArrayExpress:VIT_16s0013g02120	EnsemblPlantsGene:VIT_16s0013g02120	EnsemblPlants:VIT_16s0013g02120.t01	RefSeq:XP_003634022	RefSeq:XP_003634022.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:10063604..10066529

Molecular Weight (calculated)

103460.0 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.278

Length

900 amino acids

Sequence
(BLAST)

001: MASLKFSVSV DTYDSNKFHF SVNPSLPIIN SFARVKPINI SRLEAESWDT SDSNSVVDNI KTWNKDSGSE NLILESSNFR NDIWRRVQGV KRVRRRDPNS
101: KFRSIRNDNG HEEQKSVNHF DDEIDVNEYG IGPELSVERC NAILKGLERC SDSKTMKFFE WMRENGKLEG NVSAYNLALR VLGRRGDWDA AETMIWEMNG
201: DSDCQVNFQV YNTLIYACYK QGHVELGTKW FRLMLENGVR PNVATFGMVM SLYQKGWNVA DSEYAFSQMR SFGITCQSAY SAMITIYTRM SLYDKAEEVI
301: DFIQEDKVIL NLENWLVLLN AYSQQGKLQE AERVLFSMQN AGFSPNIVAY NMLITGYGKA SNMDAAQHIF RNLKNVGLEP DESTYRSMIE GWGRAENYKE
401: AEWYYNELKR LGFKPNSSNL YTMINLQAKY ADGEDAARTL DDMKRIGCQY SSVLGTLLQA YERAGRIDRV PLILKGSFYE YVLVNQTSCS ILVMAYVKHC
501: LVDDAIKVLQ EKQWKDTIFE DNLYHLVICS CKELGRLENA VKIYSQMPNK KPNLHIMCTM IDIYSTLGRF SDAENLYLKL KSSEISLDMI AFSIVVRMYV
601: KSGSLKDACS VLETMDEQKN IVPDIYLFCD MLRIYQQCGM LDKLQDLYYR ILKTGVTWDS EMYNCVINCC ARALPVDELS RLFDEMLLHG FAPNTITLNV
701: MLDVYGKSRL FKKARKVLWL ARKRGLVDVI SYNTIIAAYG QSKDLKKMLS TVRQMQFNGF SVSLEVYNCM LDSYGKEGQI ESFRSVLRRM KESSCASDHY
801: TYNIMINIYG EQGWIEEVAN VLTELKESGL GPDLCSYNTL IKAYGIAGMV EDAVVLVKEM RENGIQPDRI TYINLINALR KNDEFLEAVK WSLWMKQMGL

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.