Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G220900.1 | Wheat | mitochondrion, plastid | 95.04 | 94.84 |
| TraesCS5A01G222100.1 | Wheat | mitochondrion, plastid | 94.5 | 94.3 |
| HORVU5Hr1G064130.1 | Barley | plastid | 93.75 | 93.45 |
| Os09t0423300-01 | Rice | mitochondrion | 77.48 | 74.74 |
| EES13584 | Sorghum | mitochondrion | 72.84 | 71.76 |
| Zm00001d024409_P001 | Maize | plastid | 72.41 | 69.93 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 46.88 | 64.06 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 50.0 | 51.56 |
| KRH63118 | Soybean | plastid | 47.09 | 51.17 |
| CDX68697 | Canola | cytosol | 46.12 | 48.69 |
| CDY28218 | Canola | cytosol | 45.15 | 47.67 |
| Bra011225.1-P | Field mustard | cytosol | 44.94 | 47.44 |
| AT4G30825.1 | Thale cress | cytosol, plastid | 46.01 | 47.23 |
| PGSC0003DMT400029152 | Potato | cytosol | 47.52 | 47.07 |
| Solyc07g005950.2.1 | Tomato | cytosol | 47.63 | 46.28 |
| TraesCS6D01G317500.5 | Wheat | plastid | 19.61 | 17.42 |
| TraesCS7D01G068900.1 | Wheat | cytosol | 12.72 | 14.77 |
| TraesCS7D01G162800.1 | Wheat | plastid | 19.18 | 12.29 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G229900.1 | EnsemblPlantsGene:TraesCS5D01G229900 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR12683 | PANTHER:PTHR12683:SF10 |
| PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:337145798..337148584
Molecular Weight (calculated)
104080.0 Da
IEP (calculated)
7.886
GRAVY (calculated)
-0.219
Length
928 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDLVGFSS RVLPTSVGYA ADRRHSRGGA AASHGFLAWR SHPRAALKDG VVCSTEDGGR AESTLCVSAP SEDASRTGGV AADLGRDIAD GITASQASSA
101: GRKKGGRLWR RPPGGDKPAR APRRAPVRKD PQVRRVLVNN PDVNAILSGV SRESSIEECN SVLIRLEKHS DVKALDFFVW MKANGKLERN ADAYRLALQA
201: IAWKEDWRRA ELLLHEMVAV SGCRLDARAF NGLMYVCAKR RLADWGTKWF HVMLEREVQP NVSTFGMLMG LYQKTGSLKE SEFAFAKMRE CNVKCVNAYS
301: AMITLYTRSR LFDKSEEVIT LMKDDGVVPN MENWLVQLNA YSQQGKMEEA ELVLQSMEDG GVSPNVVACN TVITGYGKVS EMQKAKEVFH RLESSGLAPD
401: ETTYRSMIEG FGRADKHQEA ISYYKKLKSS GFQPNASNFY TMINLIARHD DSESAAEILR DMRAAGCQCS SIVTILVRAY GTVGRMHKVL PILQSCFYKK
501: VLYDATSCSI LVTTFVQNSL LEEALCVLRE KKWKDSDFED NLYHILICSC KEAGSYEDAV RIYSQMPESR THPNLRICCT MIDVFSIMER FTDAETLYLE
601: LKASACVLDM IAYSVIVRMY NKAGRPEDAC SVLEDMDKQK EIVPDKYLFL DMLRTYQKCG LLEKLTDTYY RILKSEVECD EAMYNCIINC CGPAIPVDEL
701: SRIFDEMIQL GHLASTVTLN VLLDIYGKAG LFNRAEKVFS MARKQGLADT ISYNTIIAAY AQSGNYRSMN YFVQKMQDAG FPVSLEAYNC MLNAYGKSGQ
801: LEEFSAVLQK MRRARCDFDH YTYNIMMNIY GRKGWIEGVA YVLSELKSRG VEPDLYSYNT LIKAYGIAGM PEDAVKLMQE MRIKGINADR VTYTNLIAAL
901: QRNENFLEAV KWSLWMKQTG VVGVGARP
101: GRKKGGRLWR RPPGGDKPAR APRRAPVRKD PQVRRVLVNN PDVNAILSGV SRESSIEECN SVLIRLEKHS DVKALDFFVW MKANGKLERN ADAYRLALQA
201: IAWKEDWRRA ELLLHEMVAV SGCRLDARAF NGLMYVCAKR RLADWGTKWF HVMLEREVQP NVSTFGMLMG LYQKTGSLKE SEFAFAKMRE CNVKCVNAYS
301: AMITLYTRSR LFDKSEEVIT LMKDDGVVPN MENWLVQLNA YSQQGKMEEA ELVLQSMEDG GVSPNVVACN TVITGYGKVS EMQKAKEVFH RLESSGLAPD
401: ETTYRSMIEG FGRADKHQEA ISYYKKLKSS GFQPNASNFY TMINLIARHD DSESAAEILR DMRAAGCQCS SIVTILVRAY GTVGRMHKVL PILQSCFYKK
501: VLYDATSCSI LVTTFVQNSL LEEALCVLRE KKWKDSDFED NLYHILICSC KEAGSYEDAV RIYSQMPESR THPNLRICCT MIDVFSIMER FTDAETLYLE
601: LKASACVLDM IAYSVIVRMY NKAGRPEDAC SVLEDMDKQK EIVPDKYLFL DMLRTYQKCG LLEKLTDTYY RILKSEVECD EAMYNCIINC CGPAIPVDEL
701: SRIFDEMIQL GHLASTVTLN VLLDIYGKAG LFNRAEKVFS MARKQGLADT ISYNTIIAAY AQSGNYRSMN YFVQKMQDAG FPVSLEAYNC MLNAYGKSGQ
801: LEEFSAVLQK MRRARCDFDH YTYNIMMNIY GRKGWIEGVA YVLSELKSRG VEPDLYSYNT LIKAYGIAGM PEDAVKLMQE MRIKGINADR VTYTNLIAAL
901: QRNENFLEAV KWSLWMKQTG VVGVGARP
001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.