Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G222100.1 | Wheat | mitochondrion, plastid | 95.38 | 95.38 |
| TraesCS5D01G229900.1 | Wheat | plastid | 94.84 | 95.04 |
| HORVU5Hr1G064130.1 | Barley | plastid | 93.23 | 93.13 |
| Os09t0423300-01 | Rice | mitochondrion | 76.99 | 74.43 |
| EES13584 | Sorghum | mitochondrion | 72.58 | 71.66 |
| Zm00001d024409_P001 | Maize | plastid | 72.37 | 70.03 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 46.88 | 64.21 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 50.0 | 51.67 |
| KRH63118 | Soybean | plastid | 46.67 | 50.82 |
| CDX68697 | Canola | cytosol | 46.56 | 49.26 |
| CDY28218 | Canola | cytosol | 45.7 | 48.35 |
| Bra011225.1-P | Field mustard | cytosol | 45.38 | 48.01 |
| AT4G30825.1 | Thale cress | cytosol, plastid | 46.34 | 47.68 |
| PGSC0003DMT400029152 | Potato | cytosol | 47.96 | 47.6 |
| Solyc07g005950.2.1 | Tomato | cytosol | 48.17 | 46.91 |
| TraesCS6B01G367600.5 | Wheat | plastid | 18.6 | 16.59 |
| TraesCS7B01G066600.1 | Wheat | plastid | 18.82 | 12.11 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G220900.1 | EnsemblPlantsGene:TraesCS5B01G220900 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR12683 | PANTHER:PTHR12683:SF10 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:395632188..395635288
Molecular Weight (calculated)
104017.0 Da
IEP (calculated)
7.914
GRAVY (calculated)
-0.206
Length
930 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDLVGFSS RVLPTSVGYA ADRRHVRAGA ATSHGFFSWR SYPRATLKDG AVCSSEDGGG GGAESTLCVS APSEDATRTG GVAADLGRDF ADGITASQTS
101: SAGRKKGGRL WRRPPGGDKP ARATRRAPVR KDPRVRRVLV NDPDVNAILS GVSGESSIEE CNSVLIRLEK HSDVKALDFF VWMKANGKLE GNADAYRLAL
201: QAIAWKEDWR RAELLLHEMV AVSGCRLDAR AFNGLMYVCA KRRLADWGTK WFHMMLEREV QPNVSTFGML TGLYQKTGSL KEAEFAFAKM RECNVKCVNA
301: YSAMITLYTR SRLFVKSEEV ITLMKDDGVA PNLENWLVQL NAYSQQGKME EAELVLQSME DGGVSPNVVA YNTVITGYGK VSEMQKAKEV FDRLVSSGLA
401: PDETTYRSMI EGFGRADKHQ EAISYYKKLK SSGFQPNASN FYTMINLIAR HDDSESAAEI LRDMRAAGCQ CSSIVTILVR AYGTVGRMHK VLSILQSCFY
501: KKVLYDATSC SILVTTFVQN SLLEEALRVL REKKWKDSDF EDNLYHILIC SCKEAGSYED AVRIYSQMPE SRTHPNLRIC CTMIDVFSTM ERFTDAETLY
601: LELKASACVL DMIAYSVIVR MYNKAGRPED ACSVLADMDK QKEIVPDKYL FLDMLRTYQK CGLLEKLTDT YYRILKSEVE CDEAMYNCII NCCGPAIPVD
701: ELSRIFDEMI QLGHLASTVT LNVLLDIYGK AGLFNRAEKV FSMARKQGLA DTISYNTIIA AYAQSGNFRS MNYFVQKMQD AGFPVSLEAY NCMLNAYGKS
801: GQLEEFSAVL QKMRRARCDF DHYTYNIMMN IYGRKGWIEG VAYVLSELKS RGVEPDLYSY NTLIKAYGIA GMPEDAVKLM QEMRIKGINA DRVTYTNLIA
901: ALQRNENFLE AVKWSLWMKQ TGVVGVGARP
101: SAGRKKGGRL WRRPPGGDKP ARATRRAPVR KDPRVRRVLV NDPDVNAILS GVSGESSIEE CNSVLIRLEK HSDVKALDFF VWMKANGKLE GNADAYRLAL
201: QAIAWKEDWR RAELLLHEMV AVSGCRLDAR AFNGLMYVCA KRRLADWGTK WFHMMLEREV QPNVSTFGML TGLYQKTGSL KEAEFAFAKM RECNVKCVNA
301: YSAMITLYTR SRLFVKSEEV ITLMKDDGVA PNLENWLVQL NAYSQQGKME EAELVLQSME DGGVSPNVVA YNTVITGYGK VSEMQKAKEV FDRLVSSGLA
401: PDETTYRSMI EGFGRADKHQ EAISYYKKLK SSGFQPNASN FYTMINLIAR HDDSESAAEI LRDMRAAGCQ CSSIVTILVR AYGTVGRMHK VLSILQSCFY
501: KKVLYDATSC SILVTTFVQN SLLEEALRVL REKKWKDSDF EDNLYHILIC SCKEAGSYED AVRIYSQMPE SRTHPNLRIC CTMIDVFSTM ERFTDAETLY
601: LELKASACVL DMIAYSVIVR MYNKAGRPED ACSVLADMDK QKEIVPDKYL FLDMLRTYQK CGLLEKLTDT YYRILKSEVE CDEAMYNCII NCCGPAIPVD
701: ELSRIFDEMI QLGHLASTVT LNVLLDIYGK AGLFNRAEKV FSMARKQGLA DTISYNTIIA AYAQSGNFRS MNYFVQKMQD AGFPVSLEAY NCMLNAYGKS
801: GQLEEFSAVL QKMRRARCDF DHYTYNIMMN IYGRKGWIEG VAYVLSELKS RGVEPDLYSY NTLIKAYGIA GMPEDAVKLM QEMRIKGINA DRVTYTNLIA
901: ALQRNENFLE AVKWSLWMKQ TGVVGVGARP
001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.