Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G220900.1 | Wheat | mitochondrion, plastid | 95.38 | 95.38 |
| TraesCS5D01G229900.1 | Wheat | plastid | 94.3 | 94.5 |
| HORVU5Hr1G064130.1 | Barley | plastid | 92.47 | 92.37 |
| Os09t0423300-01 | Rice | mitochondrion | 75.91 | 73.39 |
| EES13584 | Sorghum | mitochondrion | 70.75 | 69.85 |
| Zm00001d024409_P001 | Maize | plastid | 70.54 | 68.26 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 46.56 | 63.77 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 49.89 | 51.56 |
| KRH63118 | Soybean | plastid | 46.88 | 51.05 |
| CDX68697 | Canola | cytosol | 46.34 | 49.03 |
| CDY28218 | Canola | cytosol | 45.27 | 47.9 |
| PGSC0003DMT400029152 | Potato | cytosol | 48.06 | 47.71 |
| AT4G30825.1 | Thale cress | cytosol, plastid | 46.34 | 47.68 |
| Bra011225.1-P | Field mustard | cytosol | 45.05 | 47.67 |
| Solyc07g005950.2.1 | Tomato | cytosol | 48.17 | 46.91 |
| TraesCS7A01G074100.1 | Wheat | mitochondrion | 13.98 | 18.7 |
| TraesCS6A01G337000.4 | Wheat | plastid | 19.46 | 17.3 |
| TraesCS7A01G161500.1 | Wheat | plastid | 19.14 | 12.3 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G222100.1 | EnsemblPlantsGene:TraesCS5A01G222100 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:PPR_long | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR12683 |
| PANTHER:PTHR12683:SF10 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF17177 | PFscan:PS51375 | SEG:seg |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:438266862..438269654
Molecular Weight (calculated)
103910.0 Da
IEP (calculated)
7.904
GRAVY (calculated)
-0.206
Length
930 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDLVGFSS RVLPTSVGYA ADRRHARGGA AASHGFLAWR SHPRAALKDG AVCSSEGGGG GGAESTLCVS APSEDASRTG GAAADLGRDI ADGITASQAS
101: SAGRRKVGRS WRRPPGGDKP ARAPRRAPVR KDPQVRRVLV NDPDVNAILS GVSRESSIEE CNSVLIRLEK HSDVKALDFF VWMKANGKLE GNADAYRLAL
201: QATSWKEDWR RAELLLHEMV VVSGCRLDAQ AFNGLMYVCA KRRLADWGTK WFHMMLEREV QPNVSTFGML MGLYQKTGSL KEAEFAFAKM RECNVNCVNA
301: YSAMITLYTR SRLFDKSEEV IILMKDDGVA PNLENWLVQL NAYSQQGKME EAELVLQSME DGGVSPNVVA YNTVITGYGK VSDMQKAKEV FHRLESSGLA
401: PDETTYRSMI EGFGRADKHQ EAISYYKKLK SSGFQPNASN FYTMINLIAR HDDSESAAEI LRDMRAADCQ CSSIVTILVR AYATVGRMHK VLPILRSCFY
501: KKVLYDATSC SILVTAFVQN SLLEEALCVL REKKWKGSDF EDNLYHILIC SCKEAGSYEA AVRIYSQMPE SRTRPNLRIC CTMIDVFSTM ERFTHAETLY
601: LELKASACAL DMIAYSVIVR MYNKAGRPED VCSVLEDMDK QKEIVPDKYL FLDMLRTYQK CGLLEKLTDT YYRILKSEVE CDEAMYNCII NCCGPAIPVD
701: ELSRIFDEMI QLGHLASTVT LNVLLDIYGK AGLFNRAEKV FSMARKQGLA DTISYNTIIA AYAQSGNFRS MNYFVQKMQD AGFPVSLEAY NCMLNAYGKS
801: GQLEEFSAVL QKMRRARCDF DHYTYNIMMN IYGRKGWIEG VAYVLSELKS RGIEPDLYSY NTLIKAYGIA GMPEDAVKLM QEMRIKGINA DRVTYTNLIA
901: ALQRNENFLE AVKWSLWMKQ TGVVGVGARP
101: SAGRRKVGRS WRRPPGGDKP ARAPRRAPVR KDPQVRRVLV NDPDVNAILS GVSRESSIEE CNSVLIRLEK HSDVKALDFF VWMKANGKLE GNADAYRLAL
201: QATSWKEDWR RAELLLHEMV VVSGCRLDAQ AFNGLMYVCA KRRLADWGTK WFHMMLEREV QPNVSTFGML MGLYQKTGSL KEAEFAFAKM RECNVNCVNA
301: YSAMITLYTR SRLFDKSEEV IILMKDDGVA PNLENWLVQL NAYSQQGKME EAELVLQSME DGGVSPNVVA YNTVITGYGK VSDMQKAKEV FHRLESSGLA
401: PDETTYRSMI EGFGRADKHQ EAISYYKKLK SSGFQPNASN FYTMINLIAR HDDSESAAEI LRDMRAADCQ CSSIVTILVR AYATVGRMHK VLPILRSCFY
501: KKVLYDATSC SILVTAFVQN SLLEEALCVL REKKWKGSDF EDNLYHILIC SCKEAGSYEA AVRIYSQMPE SRTRPNLRIC CTMIDVFSTM ERFTHAETLY
601: LELKASACAL DMIAYSVIVR MYNKAGRPED VCSVLEDMDK QKEIVPDKYL FLDMLRTYQK CGLLEKLTDT YYRILKSEVE CDEAMYNCII NCCGPAIPVD
701: ELSRIFDEMI QLGHLASTVT LNVLLDIYGK AGLFNRAEKV FSMARKQGLA DTISYNTIIA AYAQSGNFRS MNYFVQKMQD AGFPVSLEAY NCMLNAYGKS
801: GQLEEFSAVL QKMRRARCDF DHYTYNIMMN IYGRKGWIEG VAYVLSELKS RGIEPDLYSY NTLIKAYGIA GMPEDAVKLM QEMRIKGINA DRVTYTNLIA
901: ALQRNENFLE AVKWSLWMKQ TGVVGVGARP
001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.