CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95569
EES18176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	EES18176	AT1G18040.1	20706207
AT4G30825.1	EER95569	AT1G20480.1	20706207
AT4G30825.1	EES18176	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024409_P001	Maize	plastid	89.28	87.51
TraesCS5D01G229900.1	Wheat	plastid	71.76	72.84
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	71.66	72.58
HORVU5Hr1G064130.1	Barley	plastid	70.59	71.43
Os09t0423300-01	Rice	mitochondrion	72.72	71.21
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	69.85	70.75
GSMUA_Achr5P04630_001	Banana	cytosol	44.9	62.3
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	47.66	49.89
KRH63118	Soybean	plastid	44.59	49.18
CDX68697	Canola	cytosol	44.8	48.01
CDY28218	Canola	cytosol	44.59	47.78
Bra011225.1-P	Field mustard	cytosol	44.27	47.44
PGSC0003DMT400029152	Potato	cytosol	46.92	47.17
AT4G30825.1	Thale cress	cytosol, plastid	44.59	46.46
Solyc07g005950.2.1	Tomato	cytosol	46.92	46.28
OQU75712	Sorghum	plastid	13.16	18.02
KXG19540	Sorghum	plastid	19.11	12.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8057871	UniProt:C5YJF6	ncoils:Coil	EnsemblPlants:EES13584
ProteinID:EES13584	ProteinID:EES13584.1	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005675
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006357	GO:GO:0006464	GO:GO:0006950
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR12683	PANTHER:PTHR12683:SF10	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3007G087100	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A87C16	RefSeq:XP_002444089.1	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:11768032..11771979

Molecular Weight (calculated)

105841.0 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.138

Length

942 amino acids

Sequence
(BLAST)

001: MASLRIKSPA GPPELRRRNL ARNPVHVGDL VGFSSKMLPM GDHRCAGSAV ITSHGVGYVG AGRKSCPGAF LKNGVVCSLD DSGVRVSTLC SSLPSEALSF
101: GSKMSLVNSM GFAQKKKGCK LWRRLQGGKK LVKHRAPKHG LGKDRHGHKS AVKDDGVDAL LSGISKESSI EECNSALIRL EKLSDEKALN FFDWMKVNGK
201: LKGNPHAYHL ALQAIAWKED WKMAELLLCE MVADSGCTLD ARAFNGLIYV CAKRRLDAWA TKWFHMMLER EVQPNLSTFG MLMVLYQKTG KLSEAEFTFQ
301: KMRNCNIKCV NAYSAMITLY TRLGLFAKSE DTINLMNNDG LVPNMENWLV RLNVYCQQGK MEEAELVLQS MVDEGFTLNI VAYNTLITGY GKSSDVQKAN
401: RVFDSLGSAG LAPDETTYRS MVEGFGRANI YEEAILYYRK LKGAGFRPNA SNFYTMINLL ARRDDNETAA EIMEDMRAAG CQCSSIVTVL VRAYGAVGRM
501: HKVLPILQAC FNKKILFDAT SCSILVTSFV QKSLLEEALY ILREKKWKDS AFEDNLYHML ICSCKEGGSY NDAVRIYNQM PKSETHPNPR ISCTMIDVFS
601: MMKRFADAEA IYLELKASAS VLDMIAYSVI VRMYIKAQRL EDACSILAEM EKQKEIIPDK YLFLDMLRTY QKCGLLEKLA DTYYWIRKSQ VECDEAMYNC
701: IINCCGRAIP VDELSRIFDE MIQQGHLANT VTLNVLLDIY GKAGLFNRAE KVFIMARKQG LADIISYNTI IAAYAKSGNF HSMNYFVQMM QDAGFPVSPE
801: AYNCMLDAYG KAGQLEEFAS VLQKMKRAKC KFDHYTYNIM INIYGRRGWI EDVSNVLAEL KDRGVVPDLY SYNTLIKAYG IARMPEDAVK LMQEMRIKGI
901: SPDRVTYANL IAALQRNENF LEAVKWSLWM RQTGVVGCGA RA

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.