Factsheet for GSMUA_Achr5P04630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P09020_001
GSMUA_Achr8P13230_001
GSMUA_Achr9P17590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	GSMUA_Achr3P09020_001	AT1G18040.1	20706207
AT4G30825.1	GSMUA_Achr9P17590_001	AT1G18040.1	20706207
AT4G30825.1	GSMUA_Achr8P13230_001	AT1G20480.1	20706207
AT4G30825.1	GSMUA_Achr3P09020_001	AT1G73690.1	20706207
AT4G30825.1	GSMUA_Achr9P17590_001	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	64.95	49.0
KRH63118	Soybean	plastid	61.12	48.59
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	64.21	46.88
TraesCS5D01G229900.1	Wheat	plastid	64.06	46.88
HORVU5Hr1G064130.1	Barley	plastid	64.21	46.83
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	63.77	46.56
Os09t0423300-01	Rice	mitochondrion	65.1	45.95
CDX68697	Canola	cytosol	59.2	45.73
Bra011225.1-P	Field mustard	cytosol	58.91	45.51
AT4G30825.1	Thale cress	cytosol, plastid	60.53	45.46
CDY28218	Canola	cytosol	58.76	45.39
EES13584	Sorghum	mitochondrion	62.3	44.9
PGSC0003DMT400029152	Potato	cytosol	61.41	44.5
Zm00001d024409_P001	Maize	plastid	61.86	43.7
Solyc07g005950.2.1	Tomato	cytosol	60.68	43.14
GSMUA_AchrUn_...	Banana	cytosol, plastid	21.8	14.51
GSMUA_Achr10P...	Banana	plastid	19.88	9.78

Protein Annotations

EnsemblPlants:GSMUA_Achr5P04630_001	EnsemblPlants:GSMUA_Achr5T04630_001	EnsemblPlantsGene:GSMUA_Achr5G04630_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR12683
PANTHER:PTHR12683:SF10	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000295DA69	UniProt:M0SVP2	MapMan:35.1	:	:

Description

Putative Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G04630_001]

Coordinates

chr5:+:3394190..3396229

Molecular Weight (calculated)

77692.4 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.169

Length

679 amino acids

Sequence
(BLAST)

001: MMLEQGIRPN VATIGMLMGL FQKKCSLSQA EFAFGRMRSL KLKCTTAYSA MIVIYTRLGL YNKSEEVISV MDKDEVLPDL ENWLVRLNAY SQQGKIEEAE
101: TVLKSMLKAG ISPNIVAYNT LITGYGKVAN MKAAKHLFQA LESVGLDPDE TTYRSMIEGF GRTDNYKEAL WYYDKLKNSG FQPNSSNFYT LINLQARHGD
201: EKGAVQTLED MRRAGCQYSS IVSSLIQAYE RIGMVEKVPH ILEASFYENI LLDPTSCSIL VMAYVKCSLL DDALRVLQDK SWEDCDFEEN LYHLLICSCK
301: EAGHFENAVK VYMQMPNSEI HQNLHITCSM IDIYSAMGRF TDAENLYLKL KGSGVTFDMV AYSIVVRMYI RAGSLENACV VLEMMEKEKD IVPDIYLFRD
401: MLRTYQKCGM TQKLANVYYW ILKSGIAWDE AMYNCVINCC GHALPVDELS RLYEEMMQNV HAANTITFNV MLDVYGKSGL LKKARKVFWM ARKQGLADVI
501: SYNTMIAAHG KSKDIKSMKS VIQKMQSAGF PVSLEAYNSL LDAYGKDNRL EEFNDVLQKM KELKCVSDHY TYNIMINIYG RKGWIEEVSR VFAELKEHGL
601: EPDLYSYNTL IKAYGIAGMV EEAVNVVQEM RRKGIKPDRI TYTNLITTLQ RNENFLEAVK WSLWMRQMER QVEFCPSLT

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.