CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73001
CDX81858
CDX83876
CDX96638
CDX96739
CDY21722
CDY29527
CDY31472
CDY33627
CDY60132

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30825.1	CDX81858	AT1G18040.1	20706207
AT4G30825.1	CDX83876	AT1G18040.1	20706207
AT4G30825.1	CDX96739	AT1G18040.1	20706207
AT4G30825.1	CDY21722	AT1G18040.1	20706207
AT4G30825.1	CDX96638	AT1G20480.1	20706207
AT4G30825.1	CDY29527	AT1G20480.1	20706207
AT4G30825.1	CDY31472	AT1G20480.1	20706207
AT4G30825.1	CDY33627	AT1G20480.1	20706207
AT4G30825.1	CDX73001	AT1G73690.1	20706207
AT4G30825.1	CDY60132	AT1G73690.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28218	Canola	cytosol	92.72	92.72
AT4G30825.1	Thale cress	cytosol, plastid	78.61	76.44
GSMUA_Achr5P04630_001	Banana	cytosol	45.73	59.2
VIT_16s0013g02120.t01	Wine grape	cytosol, plastid	59.39	58.0
KRH63118	Soybean	plastid	56.09	57.73
PGSC0003DMT400029152	Potato	cytosol	57.45	53.9
Solyc07g005950.2.1	Tomato	cytosol	57.79	53.19
TraesCS5B01G220900.1	Wheat	mitochondrion, plastid	49.26	46.56
HORVU5Hr1G064130.1	Barley	plastid	49.26	46.51
TraesCS5A01G222100.1	Wheat	mitochondrion, plastid	49.03	46.34
TraesCS5D01G229900.1	Wheat	plastid	48.69	46.12
Os09t0423300-01	Rice	mitochondrion	49.37	45.11
EES13584	Sorghum	mitochondrion	48.01	44.8
Zm00001d024409_P001	Maize	plastid	48.24	44.12
CDX92197	Canola	cytosol	3.3	18.95
CDX92196	Canola	cytosol	5.35	15.56
CDX86171	Canola	cytosol, mitochondrion	16.72	14.44
CDX80666	Canola	plastid	16.04	14.07
CDX95788	Canola	cytosol	5.35	13.13
CDX95789	Canola	cytosol	8.87	10.41

Protein Annotations

EnsemblPlants:CDX68697	EnsemblPlantsGene:GSBRNA2T00130377001	Gene3D:1.25.40.10	GO:A0A078BWS1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR12683
PANTHER:PTHR12683:SF10	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX68697
ProteinID:CDX68697.1	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EE09A6	MapMan:35.1	:

Description

BnaC01g07560D

Coordinates

chrLK031789:+:796379..799018

Molecular Weight (calculated)

100533.0 Da

IEP (calculated)

8.602

GRAVY (calculated)

-0.276

Length

879 amino acids

Sequence
(BLAST)

001: MGSLRLSIPL DPFDSKRFHL SASRTFIIGS PISVSKIRVA RLDTEANEAD NGIDSVSEAS GGRSWSSKLK GGNSLTRGIK KDVARKFSFR RESNDLDLEI
101: EGLFVNNDVN YSALKPGLSL DHYNAILKRL ESCSDTNALK FFDWMRCKRK LEGNIGAYSL ILRVLARREE WDRAEDLIKE LCGSQKSFQV FNTVIYACSK
201: KGNVKLTSKW FHMMLELGVR PNVATIGMLM GLYQKNWNVD EAEFAFSHMR KFGIVCESAY SAMITIYTRL RLYGKAEEVI ELMKEDRVKP NLENWLVMLN
301: AYSQQGKMEK AESVLISMEE AAGFAPNVIA YNTLITGYGK VSKMEAAESL FRRFNDLGMK PDETTYRSMI EGWGRADSYE QAKRYYQEMK RLGYKPNSSN
401: LFTLINLQAK YGDNEGAIMT IEDMVSTGCQ YPSILGIVLQ AYEKVGKIDA VPYVLRGSFH NHIRLNQTSF SILAMAYIKH GMVDECLALL REKKWRDSAF
501: ESHLYHLLIC SCKESGRLKD AVKIYNHTTE SNLHITSTMI DIYTSMEEFG EAEKLYSKMK SSGVVLDRIG FSIVVRMYMK AGSLEEACSV LKIMDERKDI
601: VPDVFMFRDM LRIYQKCGLQ EKLQELYYRI RKSGIHWDQE MYNCVINCCA RALRLDELSR TLEEMIRCGF RPNTVTFNVL LDVYGKAKRF KKVNEVFLLA
701: KRHGVVDVIS YNTVIAAYGH NRDFENMSTA IRNMQFDGFS VSLEAYNSML DAYGKDNQME KFRSILKRMK NSAGKTDRYT YNIMINIYGE QGWIDEVADV
801: LRELKESGLG PDLCSYNTLI KAYGIGGMVE EAVGLVREMR VSGITPDKVT YTNLVTALRR NDEFLEAIKW SLWMKQMGI

Best Arabidopsis Sequence Match ( AT4G30825.1 )
(BLAST)

001: MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
101: VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
201: CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
301: VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
401: EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
501: HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
601: RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
701: TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
801: PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK
901: QMGI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65567]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.