CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80666	Canola	plastid	92.83	94.31
Bra009971.1-P	Field mustard	cytosol, mitochondrion	97.15	93.13
AT5G27270.1	Thale cress	plastid	81.04	79.48
VIT_16s0039g02130.t01	Wine grape	plastid	56.09	53.31
KRH42711	Soybean	plastid	54.32	51.25
Solyc03g097000.2.1	Tomato	plastid	52.75	50.42
PGSC0003DMT400008145	Potato	plastid	52.65	50.33
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.0	49.9
Os06t0111300-00	Rice	plastid	28.98	49.33
OQU75712	Sorghum	plastid	30.75	45.49
Zm00001d045550_P002	Maize	plastid	44.99	43.83
HORVU0Hr1G005920.1	Barley	peroxisome	41.06	43.27
TraesCS6A01G337000.4	Wheat	plastid	43.91	42.73
TraesCS6D01G317500.5	Wheat	plastid	43.42	42.3
TraesCS6B01G367600.5	Wheat	plastid	42.93	41.9
TraesCS7A01G074100.1	Wheat	mitochondrion	27.8	40.72
TraesCS7D01G068900.1	Wheat	cytosol	28.98	36.92
CDY28218	Canola	cytosol	14.44	16.72
CDX68697	Canola	cytosol	14.44	16.72
CDX95788	Canola	cytosol	5.21	14.8
CDX92197	Canola	cytosol	2.16	14.38
CDX92196	Canola	cytosol	4.13	13.91
CDX95789	Canola	cytosol	7.86	10.68

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX86171	ProteinID:CDX86171	ProteinID:CDX86171.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00144236001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF321	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EE535A	SEG:seg	:	:	:	:

Description

BnaA06g28880D

Coordinates

chrLK031845:-:163545..167962

Molecular Weight (calculated)

115040.0 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.225

Length

1018 amino acids

Sequence
(BLAST)

0001: MVYIRRQSLE VADTARFLPV NMKSDFLTST THLHPILLPK IPSRKSRTTI KCSSSPGVRP DPWSLSDGNP ERPKPRYERP KHPLSDDDAR RIIKKKAQYL
0101: SALRRNQGSH AMTPKWIKRT PEQMVQYLED DRNGQMYGKH VVAAIKKVRG LSQRREEGSG ADMRVVMGSF VAKLTFRDMC VVLKEQRGWK QVRDFFAWMK
0201: LQLSYRPSVV VYTIVLRLYG QVGKIKLAEE TFLEMLEVGC EPDAVACGTM LCTYARWGRH NAMLTFYKAV RERRILLSTS VYNFMLSSLQ KKSLHDKVID
0301: LWLEMVEEGV PPTEFTYTLV VSSYAKQGFN EDALQAFGEM KSLGFVPEEV TYSSVISLCV KAGDWDEAVR LYEDMRSKGI TPSNYTCASM LSLYYKTEDY
0401: PKALALFADM ERFKIPADEV IRGLIIRIYG KLGLFHDAET IFEETKRLNI LSDEKTYLAM SQVHLNSGNV AKALDVIEMM KTRDIPISRF AYIVMLQCYA
0501: KIQNVDSAED AFRGLSKTGL LPDASSCNDM LSLYTRLSLG EKAKSFIKQI VADQVQFDIE LYKTVMRVYC KEGMVAEAQE LVEKMGREAV VKDNRFVQTL
0601: AEAMHSERTD LGSAAVNRVI SSFVREGDVS KAEVLADLII RLGLSIEEET TAALIAVYGR QHKLKEAKRL YLAAGESKIQ GKSVVNSMID AYVRCGWLEA
0701: AYGLFMESAE KGCDPSAVTI SILVNALTNR GKHREAEDVS QTCLEKNMEL DTVGYNTLIK AMLEAGKLKC ASEIYERMCN SGVSCSIQTY NTMISVYGRG
0801: LQVDKAVEVF NSARRSALYL DEKIYSNIIM HYGKAGKMSE ALALFSEMQK KGIKPGTTSY NMLVKICAAR GLHHEVDKLL QAMERNGHFT DNSSTYLSLI
0901: QAYAESSQYK EAEKMIALMQ EKSISLSQSH FSPLLYAFVK AGMIDEAERI YCKMSEAGIS PDSACRRAIL KGYMNCGEVE KGILLYEKMM RNSVEDDRLV
1001: IRVVQDLYKA IGKEQQFL

Best Arabidopsis Sequence Match ( AT5G27270.1 )
(BLAST)

0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV

Arabidopsis Description

EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.