CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86171	Canola	cytosol, mitochondrion	94.31	92.83
Bra009971.1-P	Field mustard	cytosol, mitochondrion	92.22	87.01
AT5G27270.1	Thale cress	plastid	83.73	80.83
VIT_16s0039g02130.t01	Wine grape	plastid	56.89	53.22
KRH42711	Soybean	plastid	54.59	50.7
PGSC0003DMT400008145	Potato	plastid	53.79	50.61
Solyc03g097000.2.1	Tomato	plastid	53.59	50.42
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.9	50.0
Os06t0111300-00	Rice	plastid	29.24	49.0
OQU75712	Sorghum	plastid	31.34	45.64
Zm00001d045550_P002	Maize	plastid	46.01	44.11
HORVU0Hr1G005920.1	Barley	peroxisome	42.32	43.89
TraesCS6A01G337000.4	Wheat	plastid	45.11	43.21
TraesCS6D01G317500.5	Wheat	plastid	44.81	42.97
TraesCS6B01G367600.5	Wheat	plastid	44.31	42.57
TraesCS7A01G074100.1	Wheat	mitochondrion	28.94	41.73
TraesCS7D01G068900.1	Wheat	cytosol	29.84	37.42
CDY28218	Canola	cytosol	14.07	16.04
CDX68697	Canola	cytosol	14.07	16.04
CDX95788	Canola	cytosol	5.29	14.8
CDX92196	Canola	cytosol	4.39	14.57
CDX92197	Canola	cytosol	2.2	14.38
CDX95789	Canola	cytosol	7.49	10.01

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX80666	ProteinID:CDX80666	ProteinID:CDX80666.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00133815001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF321	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EF3D89	SEG:seg	:	:	:	:

Description

BnaC07g27780D

Coordinates

chrLK031821:-:1985349..1989638

Molecular Weight (calculated)

113036.0 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.290

Length

1002 amino acids

Sequence
(BLAST)

0001: MKSDFLTSTT HLHPSISLPK MPSRNSRTTI KCSSSPGVRP DPWSLSDGNP ERPKPRYERP KHPLSDDDAR RIIKKKAQYL SALRRNQGSH AMTPKWIKRT
0101: PEQMVQYLED DRNGQMYGKH VVAAIKKVRG LSQRREEGSG ADMRVVMGSF VAKLTFRDMC VVLKEQRGWR QVRDFFAWMK LQLSYRPSVV VYTIVLRLYG
0201: QVGKIKLAEE TFLEMLEVGC EPDAVACGTM LCTYARWGRH SAMLTFYKAV RERRIILSTS VYNFMLSSLQ KKSLHDKVID LWLEMVEEGV PPTEFTYTLV
0301: VSSYAKQGFN EDALQAFGEM KSLGFVPEEV TYSSVISLSV KAGDWDGAVG LYEDMRSKGI TPSNYTCASM LSLYYKTEDY PKALALFADM ERFKIPADEV
0401: IRGLIIRIYG KLGLFHDAET IFEETKRRNI LSDEKTYLAM SQVHLNSGNV AKALDVIEMM KTRDIPISRF AYIVMLQCYA KIQNVDSAED AFRGLSKTGL
0501: LPDASSCNDM LNLYTRLNLG EKAKGFIKQI VADQVQFDIE LYKTVMRVYC KEGMVAEAQE MVEKMSREAV VKDNRFVQTL AEAMHSERAK DKHEATDLGS
0601: AAVNRIINSF VREGDTSKAD LLADLIIRLG LSIEEETTAA LIAVYGRQHK LKEAKRLYLA AGESKTQGKS VINSMIDAYV RCGWLEAAYG LFMGSAEKGS
0701: DPSPVTISIL VNALTNRGKH REAEDISNTC LEKNMELDTV GYNTLIKAML EAGKLKCASE IYERMCNSGV PCSIQTYNTM LSVYGRGLQV DKAVEVFNSA
0801: RRSGLYLDEK IYTNMIMHYG KAGKMSEALA LFSEMQKKGI KPGTTSYNML VKICATRGLH HEVDKLLQAM ERNGHFTDNS STYLSLIQAY AESSQYEEAE
0901: KIITLMQEKC ITLSQSHFSP LLYAFVKAGM MDEAERIYSK MSEAGISPDS ACRRAILKGY MNCGDAEKGI LLYEKMMRNS VEDDRLVIRV VQDLYKVIGK
1001: EQ

Best Arabidopsis Sequence Match ( AT5G27270.1 )
(BLAST)

0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV

Arabidopsis Description

EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.