Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86171 | Canola | cytosol, mitochondrion | 93.13 | 97.15 |
| CDX80666 | Canola | plastid | 87.01 | 92.22 |
| AT5G27270.1 | Thale cress | plastid | 82.39 | 84.3 |
| VIT_16s0039g02130.t01 | Wine grape | plastid | 55.74 | 55.28 |
| KRH42711 | Soybean | plastid | 53.95 | 53.1 |
| Solyc03g097000.2.1 | Tomato | plastid | 51.98 | 51.83 |
| PGSC0003DMT400008145 | Potato | plastid | 51.98 | 51.83 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 47.83 | 49.8 |
| Os06t0111300-00 | Rice | plastid | 27.87 | 49.5 |
| OQU75712 | Sorghum | plastid | 29.19 | 45.06 |
| Zm00001d045550_P002 | Maize | plastid | 43.13 | 43.83 |
| HORVU0Hr1G005920.1 | Barley | peroxisome | 39.17 | 43.06 |
| TraesCS6A01G337000.4 | Wheat | plastid | 41.81 | 42.45 |
| TraesCS6D01G317500.5 | Wheat | plastid | 41.43 | 42.11 |
| TraesCS6B01G367600.5 | Wheat | plastid | 41.15 | 41.9 |
| TraesCS7A01G074100.1 | Wheat | mitochondrion | 26.55 | 40.58 |
| TraesCS7D01G068900.1 | Wheat | cytosol | 27.68 | 36.8 |
| Bra011225.1-P | Field mustard | cytosol | 14.31 | 17.29 |
| Bra022281.1-P | Field mustard | cytosol | 14.97 | 12.12 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra009971 | EnsemblPlants:Bra009971.1 | EnsemblPlants:Bra009971.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M4D0H3 | PFAM:PF01535 |
| PFAM:PF13041 | PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF321 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000253F515 | SEG:seg | : | : | : | : |
Description
AT5G27270 (E=0.0) EMB976 | EMB976 (EMBRYO DEFECTIVE 976)
Coordinates
chrA06:-:18392720..18397137
Molecular Weight (calculated)
120030.0 Da
IEP (calculated)
8.634
GRAVY (calculated)
-0.216
Length
1062 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVYIRRQSLE VADTARFLPV NMKSDFLTST THLHPILLPK IPSRKSRTTI KCSSSPGVRP DPWSLSDGNP ERPKPRYERP KHPLSDDDAR RIIKKKAQYL
0101: SALRRNQGSH AMTPKWIKRT PEQMVQYLED DRNGQMYGKH VVAAIKKVRG LSQRREEGSG ADMRVVMGSF VAKLTFRDMC VVLKEQRGWK QVRDFFAWMK
0201: LQLSYRPSVV VYTIVLRLYG QVGKIKLAEE TFLEMLEVGC EPDAVACGTM LCTYARWGRH NAMLTFYKAV RERRILLSTS VYNFMLSSLQ KKSLHDKVID
0301: LWLEMVEEGV PPTEFTYTLV VSSYAKQGFN EDALQAFGEM KSLGFVPEEV TYSSVISLCV KAGDWDEAVR LYEDMRSKGI TPSNYTCASM LSLYYKTEDY
0401: PKALALFADM ERFKIPADEV IRGLIIRIYG KLGLFHDAET IFEETKRLNI LSDEKTYLAM SQVHLNSGNV AKALDVIEMM KTRDIPISRF AYIVMLQCYA
0501: KIQNVDSAED AFRGLSKTGL LPDASSCNDM LSLYTRLSLG EKAKSFIKQI VADQVQFDIE LYKTVMRVYC KEGMVAEAQE LVEKMGREAV VKDNRFVQTL
0601: AEAMHSERVK DKHEAVINVS RLDVTALGMV LNLRLKEENV NETKAILNLM FKTDLGSAAV NRVISSFVRE GDVSKAEVLA DLIIRLGLSI EEETTAALIA
0701: VYGRQHKLKE AKRLYLAAGE SKIQGKSVVN SMIDAYVRCG WLEAAYGLFM ESAEKGCDPS AVTISILVNA LTNRGKHREA EDVSQTCLEK NMELDTVGYN
0801: TLIKAMLEAG KLKCASEIYE RMCNSGVSCS IQTYNTMISV YGRGLQVDKA VEVFNSARRS ALYLDEKIYS NIIMHYGKAG KMSEALALFS EMQKKGIKPG
0901: TTSYNMLVKI CAARGLHHEV DKLLQAMERN GHFTDNSSTY LSLIQAYAES SQYKEAEKMI ALMQEKSISL SQSHFSPLLY AFVKAGMIDE AERIYCKMSE
1001: AGISPDSACR RAILKGYMNC GEVEKGILLY EKMMRNSVED DRLVIRVVQD LYKAIGKEQQ FL
0101: SALRRNQGSH AMTPKWIKRT PEQMVQYLED DRNGQMYGKH VVAAIKKVRG LSQRREEGSG ADMRVVMGSF VAKLTFRDMC VVLKEQRGWK QVRDFFAWMK
0201: LQLSYRPSVV VYTIVLRLYG QVGKIKLAEE TFLEMLEVGC EPDAVACGTM LCTYARWGRH NAMLTFYKAV RERRILLSTS VYNFMLSSLQ KKSLHDKVID
0301: LWLEMVEEGV PPTEFTYTLV VSSYAKQGFN EDALQAFGEM KSLGFVPEEV TYSSVISLCV KAGDWDEAVR LYEDMRSKGI TPSNYTCASM LSLYYKTEDY
0401: PKALALFADM ERFKIPADEV IRGLIIRIYG KLGLFHDAET IFEETKRLNI LSDEKTYLAM SQVHLNSGNV AKALDVIEMM KTRDIPISRF AYIVMLQCYA
0501: KIQNVDSAED AFRGLSKTGL LPDASSCNDM LSLYTRLSLG EKAKSFIKQI VADQVQFDIE LYKTVMRVYC KEGMVAEAQE LVEKMGREAV VKDNRFVQTL
0601: AEAMHSERVK DKHEAVINVS RLDVTALGMV LNLRLKEENV NETKAILNLM FKTDLGSAAV NRVISSFVRE GDVSKAEVLA DLIIRLGLSI EEETTAALIA
0701: VYGRQHKLKE AKRLYLAAGE SKIQGKSVVN SMIDAYVRCG WLEAAYGLFM ESAEKGCDPS AVTISILVNA LTNRGKHREA EDVSQTCLEK NMELDTVGYN
0801: TLIKAMLEAG KLKCASEIYE RMCNSGVSCS IQTYNTMISV YGRGLQVDKA VEVFNSARRS ALYLDEKIYS NIIMHYGKAG KMSEALALFS EMQKKGIKPG
0901: TTSYNMLVKI CAARGLHHEV DKLLQAMERN GHFTDNSSTY LSLIQAYAES SQYKEAEKMI ALMQEKSISL SQSHFSPLLY AFVKAGMIDE AERIYCKMSE
1001: AGISPDSACR RAILKGYMNC GEVEKGILLY EKMMRNSVED DRLVIRVVQD LYKAIGKEQQ FL
0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
Arabidopsis Description
EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.