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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80666 Canola plastid 80.83 83.73
Bra009971.1-P Field mustard cytosol, mitochondrion 84.3 82.39
CDX86171 Canola cytosol, mitochondrion 79.48 81.04
VIT_16s0039g02130.t01 Wine grape plastid 58.57 56.77
KRH42711 Soybean plastid 54.53 52.46
Solyc03g097000.2.1 Tomato plastid 52.89 51.55
PGSC0003DMT400008145 Potato plastid 52.89 51.55
GSMUA_AchrUn_... Banana cytosol, plastid 49.23 50.1
Os06t0111300-00 Rice plastid 28.52 49.5
OQU75712 Sorghum plastid 30.06 45.35
Zm00001d045550_P002 Maize plastid 43.64 43.35
HORVU0Hr1G005920.1 Barley peroxisome 39.79 42.75
TraesCS6A01G337000.4 Wheat plastid 42.68 42.35
TraesCS6B01G367600.5 Wheat plastid 42.2 41.99
TraesCS6D01G317500.5 Wheat plastid 42.1 41.82
TraesCS7A01G074100.1 Wheat mitochondrion 26.98 40.29
TraesCS7D01G068900.1 Wheat cytosol 28.52 37.05
AT4G30825.1 Thale cress cytosol, plastid 14.16 16.26
AT3G18110.1 Thale cress plastid 15.7 11.32
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:832785ProteinID:AAB61077.1EMBL:AC007123ProteinID:AED93665.1
ArrayExpress:AT5G27270EnsemblPlantsGene:AT5G27270RefSeq:AT5G27270TAIR:AT5G27270RefSeq:AT5G27270-TAIR-GEnsemblPlants:AT5G27270.1
TAIR:AT5G27270.1Unigene:At.30814Symbol:EMB976GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009451
GO:GO:0009987GO:GO:0016787GO:GO:0043231GO:GO:0090305InterPro:IPR002885InterPro:IPR011990
RefSeq:NP_198079.1UniProt:O04647PFAM:PF01535PFAM:PF13041PFAM:PF13812PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF321InterPro:Pentatricopeptide_repeatSUPFAM:SSF48452SUPFAM:SSF81901TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sf
UniParc:UPI00001625F2SEG:seg::::
Description
EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
Coordinates
chr5:+:9605484..9609804
Molecular Weight (calculated)
117458.0 Da
IEP (calculated)
8.739
GRAVY (calculated)
-0.253
Length
1038 amino acids
Sequence
(BLAST)
0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.