Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g097000.2.1 | Tomato | plastid | 95.4 | 95.4 |
| VIT_16s0039g02130.t01 | Wine grape | plastid | 64.6 | 64.24 |
| KRH42711 | Soybean | plastid | 58.22 | 57.46 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 53.15 | 55.49 |
| CDX80666 | Canola | plastid | 50.61 | 53.79 |
| AT5G27270.1 | Thale cress | plastid | 51.55 | 52.89 |
| CDX86171 | Canola | cytosol, mitochondrion | 50.33 | 52.65 |
| Bra009971.1-P | Field mustard | cytosol, mitochondrion | 51.83 | 51.98 |
| Os06t0111300-00 | Rice | plastid | 26.39 | 46.99 |
| TraesCS6A01G337000.4 | Wheat | plastid | 45.26 | 46.08 |
| HORVU0Hr1G005920.1 | Barley | peroxisome | 41.5 | 45.76 |
| TraesCS6B01G367600.5 | Wheat | plastid | 44.79 | 45.73 |
| TraesCS6D01G317500.5 | Wheat | plastid | 44.6 | 45.45 |
| Zm00001d045550_P002 | Maize | plastid | 44.13 | 44.98 |
| OQU75712 | Sorghum | plastid | 28.64 | 44.33 |
| TraesCS7A01G074100.1 | Wheat | mitochondrion | 27.51 | 42.16 |
| TraesCS7D01G068900.1 | Wheat | cytosol | 29.77 | 39.67 |
| PGSC0003DMT400029152 | Potato | cytosol | 16.34 | 18.57 |
| PGSC0003DMT400001470 | Potato | nucleus | 2.54 | 15.34 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102580066 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M0ZU54 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF17177 |
| EnsemblPlantsGene:PGSC0003DMG400003143 | PGSC:PGSC0003DMG400003143 | EnsemblPlants:PGSC0003DMT400008145 | InterPro:PPR_long | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF321 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000296E09B | RefSeq:XP_006347572.1 | SEG:seg | : | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003143]
Coordinates
chr3:-:46777586..46784111
Molecular Weight (calculated)
120125.0 Da
IEP (calculated)
8.879
GRAVY (calculated)
-0.183
Length
1065 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEALQSSFLC STPLKSPSHK PTRKPKPRPT IVSCSVTPDP WTLSDGNSKN LNKPKPRSKH PKNPLSDDNA RRIIKAKAQY LSALRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGNLYGK HVVAAIKRVR SLSVKAEGSY DMREVMGSFV TKLTFREMCV VLKEQRGWRQ VRDFFAWMKL QLSYRPSVII YTIILRTYGQ
0201: VGKIKLAEQT FLEMLEAGCE PDEVACGTML CAYARWGRHK AMMSFFSAVQ ERGITPSTAV FNFMLSSLQK RSLHENVISI WKQMTEKGVE LNHFTFTVVI
0301: CSLVKEGHAE VAFKTLNQMK SLKFIPEEAT YSILISLISK SGNYDDAFRL YEDMRSQGII PSNFTCASLL TMYYRKEDYP KALALFEEME RYGIKIDEVI
0401: YGLLIRIYGK LGLYEDAQKT FEDVKKLGVI SNEKTYTTMA QVHLNFGNIE DALNIMDEMK SKNISFSNFC YGILLRCYIM KEDLASAEAV FQALSKMQIP
0501: ECGFCKDMLN LYMRLGLTEK AKDFIFQIRK IQVEFDEELL KTVMKVFCIE GMVRDAVQLI REFSASKTFE DSVFTQTFSV AIHGNDRFSA TDIASKPLDQ
0601: PGAMAFELAL ILYIADGNTM KAEETLNLLL KTANGLSVAS QLIRKFTKEG DISKAEDLYK LLMKLGRKPE DVASASLINF YGKQKNLKEA LNVFASVANS
0701: SSTGSLIYNS IIDSYNRCDK QEEAYTFYRE EMKKGHVLGP VAISMLVNGL SNCGRYTEAE AIIHNSLRAN LELDTVAYNT FIKAMLQAGK LRLASRVYEH
0801: MLSSGVPPSI QTYNTMISVY GRGRNLDKAV KAFDIAQKMG ISLDEKAYTN LICYYGKAGK YDEASNLFVR MQEAGIKPGQ VSCNVMINVY AAAGLYQEAE
0901: VLMHSMRSSG CKPDSLTYLA LIRAYTRVGE CSEAEKAIDS MQKEGIPPSC AHFNVLLSGF AKGGLIREVE RIYNNLMNAE LQPDLESHSL MLRCYMDYGH
1001: VVEGISFFER ISKSVKPDRF IMSAAVHLYR SAGLVLKAEG VLRSMNSFGI PFLEKLEVGS KLKAD
0101: TPEQMVQYLE DDRNGNLYGK HVVAAIKRVR SLSVKAEGSY DMREVMGSFV TKLTFREMCV VLKEQRGWRQ VRDFFAWMKL QLSYRPSVII YTIILRTYGQ
0201: VGKIKLAEQT FLEMLEAGCE PDEVACGTML CAYARWGRHK AMMSFFSAVQ ERGITPSTAV FNFMLSSLQK RSLHENVISI WKQMTEKGVE LNHFTFTVVI
0301: CSLVKEGHAE VAFKTLNQMK SLKFIPEEAT YSILISLISK SGNYDDAFRL YEDMRSQGII PSNFTCASLL TMYYRKEDYP KALALFEEME RYGIKIDEVI
0401: YGLLIRIYGK LGLYEDAQKT FEDVKKLGVI SNEKTYTTMA QVHLNFGNIE DALNIMDEMK SKNISFSNFC YGILLRCYIM KEDLASAEAV FQALSKMQIP
0501: ECGFCKDMLN LYMRLGLTEK AKDFIFQIRK IQVEFDEELL KTVMKVFCIE GMVRDAVQLI REFSASKTFE DSVFTQTFSV AIHGNDRFSA TDIASKPLDQ
0601: PGAMAFELAL ILYIADGNTM KAEETLNLLL KTANGLSVAS QLIRKFTKEG DISKAEDLYK LLMKLGRKPE DVASASLINF YGKQKNLKEA LNVFASVANS
0701: SSTGSLIYNS IIDSYNRCDK QEEAYTFYRE EMKKGHVLGP VAISMLVNGL SNCGRYTEAE AIIHNSLRAN LELDTVAYNT FIKAMLQAGK LRLASRVYEH
0801: MLSSGVPPSI QTYNTMISVY GRGRNLDKAV KAFDIAQKMG ISLDEKAYTN LICYYGKAGK YDEASNLFVR MQEAGIKPGQ VSCNVMINVY AAAGLYQEAE
0901: VLMHSMRSSG CKPDSLTYLA LIRAYTRVGE CSEAEKAIDS MQKEGIPPSC AHFNVLLSGF AKGGLIREVE RIYNNLMNAE LQPDLESHSL MLRCYMDYGH
1001: VVEGISFFER ISKSVKPDRF IMSAAVHLYR SAGLVLKAEG VLRSMNSFGI PFLEKLEVGS KLKAD
0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
Arabidopsis Description
EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.