Factsheet for Os06t0111300-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75712	Sorghum	plastid	69.06	60.03
TraesCS6A01G337000.4	Wheat	plastid	67.06	38.34
TraesCS6D01G317500.5	Wheat	plastid	66.89	38.28
Zm00001d045550_P002	Maize	plastid	66.39	37.99
TraesCS6B01G367600.5	Wheat	plastid	65.89	37.78
HORVU0Hr1G005920.1	Barley	peroxisome	60.03	37.16
GSMUA_AchrUn_...	Banana	cytosol, plastid	56.19	32.94
TraesCS7A01G074100.1	Wheat	mitochondrion	37.29	32.09
CDX80666	Canola	plastid	49.0	29.24
CDX86171	Canola	cytosol, mitochondrion	49.33	28.98
VIT_16s0039g02130.t01	Wine grape	plastid	51.51	28.76
AT5G27270.1	Thale cress	plastid	49.5	28.52
TraesCS7D01G068900.1	Wheat	cytosol	37.46	28.04
Bra009971.1-P	Field mustard	cytosol, mitochondrion	49.5	27.87
PGSC0003DMT400008145	Potato	plastid	46.99	26.39
KRH42711	Soybean	plastid	47.49	26.32
Solyc03g097000.2.1	Tomato	plastid	46.82	26.29
Os09t0423300-01	Rice	mitochondrion	16.05	9.98
Os06t0111400-01	Rice	plasma membrane	10.54	7.27
Os06t0199100-01	Rice	cytosol	14.21	6.63

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0P0WS22	ProteinID:BAS95789.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os06g0111300	EnsemblPlants:Os06t0111300-00	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177
InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF321	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001C7C01F	SEG:seg	:	:

Description

Hypothetical conserved gene. (Os06t0111300-00)

Coordinates

chr6:-:629986..633799

Molecular Weight (calculated)

67127.7 Da

IEP (calculated)

7.737

GRAVY (calculated)

-0.211

Length

598 amino acids

Sequence
(BLAST)

001: MAAAIAGAAA STAVSITCSS YSYEDDGAAT SWSLSSGTSS SSSSSQRQRP YRRLLHDEAQ RLRRERRGQG SGAHTPRWVR RTPDQMARYV EDDRAGHVYG
101: RHVVAAVRAA RATASCSSPS SADMREAMAS FVAKLTFREM CFVLHELRGW RQARDFFAWM KLQLCYEPSV VAYTILLRLY GQVGKVKLAE VTFLEMLQAG
201: CEPDAVACGT LLCAYARWGK LNDMLMFYAA VRRRDIVPSI SVFNFMVSSL QKQKLHGKVI HLWEQMLEAN VAPNQFTYTV VIGSYAKEGM LEEAMDAFGE
301: MKRRRFVPEE ATYSLLISLC AKHGKGEEAL GLYDEMKVKS IVPSNYTCAS VLTLYYKNED YSKALSLFSE MEQNKIVPDE VIYGILVRIY GKLGLYEDAQ
401: RMFEEIDKAG LLSDEQTYVA MAQVHMNVQN YDRALQVLDA MRARNVKPSQ FSYSALLRCH VAKEDVDAAE DTFRALSNYG PPDVFCCNDL LRLYMRLGHL
501: DKARALILKM RKEALQFDED LCVTVLEVCC KTSINKDTDN LTEVIQNEGS SSKVLNPTDS STLSMMLKSL LDKPGGLSSV SQLIMKFARE GEEARCRT

Best Arabidopsis Sequence Match ( AT5G27270.4 )
(BLAST)

001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTV GLSQILRNIY LVA

Arabidopsis Description

EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.