Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008145 | Potato | plastid | 64.24 | 64.6 |
| Solyc03g097000.2.1 | Tomato | plastid | 63.68 | 64.04 |
| KRH42711 | Soybean | plastid | 63.4 | 62.93 |
| AT5G27270.1 | Thale cress | plastid | 56.77 | 58.57 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 55.56 | 58.33 |
| CDX80666 | Canola | plastid | 53.22 | 56.89 |
| CDX86171 | Canola | cytosol, mitochondrion | 53.31 | 56.09 |
| Bra009971.1-P | Field mustard | cytosol, mitochondrion | 55.28 | 55.74 |
| Os06t0111300-00 | Rice | plastid | 28.76 | 51.51 |
| HORVU0Hr1G005920.1 | Barley | peroxisome | 44.63 | 49.48 |
| TraesCS6A01G337000.4 | Wheat | plastid | 47.25 | 48.37 |
| OQU75712 | Sorghum | plastid | 30.91 | 48.11 |
| TraesCS6B01G367600.5 | Wheat | plastid | 46.78 | 48.03 |
| TraesCS6D01G317500.5 | Wheat | plastid | 46.78 | 47.94 |
| Zm00001d045550_P002 | Maize | plastid | 46.69 | 47.85 |
| TraesCS7A01G074100.1 | Wheat | mitochondrion | 29.97 | 46.19 |
| TraesCS7D01G068900.1 | Wheat | cytosol | 32.03 | 42.93 |
| VIT_16s0013g02120.t01 | Wine grape | cytosol, plastid | 16.15 | 19.22 |
| VIT_16s0039g02570.t01 | Wine grape | plastid | 17.65 | 12.75 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100261338 | wikigene:100261338 | MapMan:35.1 | ProteinID:CCB50606 | ProteinID:CCB50606.1 |
| UniProt:F6HEG0 | EMBL:FN595750 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | EntrezGene:LOC100261338 |
| wikigene:LOC100261338 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF321 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001984D85 |
| ArrayExpress:VIT_16s0039g02130 | EnsemblPlantsGene:VIT_16s0039g02130 | EnsemblPlants:VIT_16s0039g02130.t01 | RefSeq:XP_002274101 | RefSeq:XP_002274101.1 | SEG:seg |
Description
No Description!
Coordinates
chr16:-:2181507..2188198
Molecular Weight (calculated)
120606.0 Da
IEP (calculated)
8.381
GRAVY (calculated)
-0.169
Length
1071 amino acids
Sequence
(BLAST)
(BLAST)
0001: MALAIEPLKT SFICTTPPLP LKPSKNLKSC QNPKKPRNLI IHCSVHPDPW SLSTGNRPKP ISKNPKNPLS DDNARRIIKG KARYLSVLRR NQGPQAQTPK
0101: WIKRTPEQMV QYLQDDRNGH LYGKHVVAAI RIVRSLAARP DGSYNMREVM GSFVAKLSFR EMCVVLKEQR GWRQARDFFG WMKLQLSYQP SVIVYTILLR
0201: VYGQVGKIKL AEQAFLEMLE AGCEPDEVAC GTMLCTYARW GRHKAMLSFY SAVQERGIIP SIAVFNFMLS SLQKKSLHGK VIDLWREMVD KGVVPNSFTY
0301: TVVISSLVKD GLVEESFKTF YEMKNLGFVP EEVTYSLLIS LSSKTGNRDE AIKLYEDMRY RRIVPSNYTC ASLLTLYYKN GDYSRAVSLF SEMEKNKIVA
0401: DEVIYGLLIR IYGKLGLYED AEKTFKETEQ LGLLTNEKTY IAMAQVHLNS GNFEKALTIM ELMRSRNIWF SRFSYIVLLQ CYVMKEDLAS AEATFQALSK
0501: TGLPDAGSCN DMLNLYIKLD LLEKAKDFIF QIRKDPVEFD MELCKTVMKV YCKKGMLRDA KQLIQEMGTN GLFKDSEFIQ TLSLVMHEES ERPDYVDDTV
0601: EALNQNNTLA LELMLGLYSE VGNACKVEEI LKMLLKTAGG LSVASHLISK FTREGDISKA QNLNDQLVKL GRGAEDASIA SLITLYGKQH KLKKAIEVFS
0701: AIEGCTSGKL IYISMIDAYA KCGKAEEAYH LYEEVTGKGI ELGVVSISKV VHALANYGKH QEAENVIRRS FEDGLELDTV AYNTFINAML GAGRLHFANS
0801: IYDRMVSLGV APSIQTYNTM ISVYGRGRKL DKAVEMFNKA RCSGVGVSLD EKTYTNLISY YGKAGKSHEA SLLFREMQEE GIKPGKVSYN IMINVYATAG
0901: LHHEAQELFQ AMLRDGCSPD SLTYLALIRA YTQSFKFLEA EETIMSMQNE GVLPSCVHFN QLLSAFAKAG FTEEAERVYH TLLSAGLSPD VACYRTMLRG
1001: YLDYGCVEKG ITFFEQIRES VEPDRFIMSS AVHFYKLAGK ELEAEGILDS MKSLGIPFLK NLEVGSKTKA P
0101: WIKRTPEQMV QYLQDDRNGH LYGKHVVAAI RIVRSLAARP DGSYNMREVM GSFVAKLSFR EMCVVLKEQR GWRQARDFFG WMKLQLSYQP SVIVYTILLR
0201: VYGQVGKIKL AEQAFLEMLE AGCEPDEVAC GTMLCTYARW GRHKAMLSFY SAVQERGIIP SIAVFNFMLS SLQKKSLHGK VIDLWREMVD KGVVPNSFTY
0301: TVVISSLVKD GLVEESFKTF YEMKNLGFVP EEVTYSLLIS LSSKTGNRDE AIKLYEDMRY RRIVPSNYTC ASLLTLYYKN GDYSRAVSLF SEMEKNKIVA
0401: DEVIYGLLIR IYGKLGLYED AEKTFKETEQ LGLLTNEKTY IAMAQVHLNS GNFEKALTIM ELMRSRNIWF SRFSYIVLLQ CYVMKEDLAS AEATFQALSK
0501: TGLPDAGSCN DMLNLYIKLD LLEKAKDFIF QIRKDPVEFD MELCKTVMKV YCKKGMLRDA KQLIQEMGTN GLFKDSEFIQ TLSLVMHEES ERPDYVDDTV
0601: EALNQNNTLA LELMLGLYSE VGNACKVEEI LKMLLKTAGG LSVASHLISK FTREGDISKA QNLNDQLVKL GRGAEDASIA SLITLYGKQH KLKKAIEVFS
0701: AIEGCTSGKL IYISMIDAYA KCGKAEEAYH LYEEVTGKGI ELGVVSISKV VHALANYGKH QEAENVIRRS FEDGLELDTV AYNTFINAML GAGRLHFANS
0801: IYDRMVSLGV APSIQTYNTM ISVYGRGRKL DKAVEMFNKA RCSGVGVSLD EKTYTNLISY YGKAGKSHEA SLLFREMQEE GIKPGKVSYN IMINVYATAG
0901: LHHEAQELFQ AMLRDGCSPD SLTYLALIRA YTQSFKFLEA EETIMSMQNE GVLPSCVHFN QLLSAFAKAG FTEEAERVYH TLLSAGLSPD VACYRTMLRG
1001: YLDYGCVEKG ITFFEQIRES VEPDRFIMSS AVHFYKLAGK ELEAEGILDS MKSLGIPFLK NLEVGSKTKA P
0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
Arabidopsis Description
EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.