CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0111300-00	Rice	plastid	60.03	69.06
Zm00001d045550_P002	Maize	plastid	78.49	51.67
TraesCS6D01G317500.5	Wheat	plastid	68.46	45.07
TraesCS6A01G337000.4	Wheat	plastid	68.31	44.93
HORVU0Hr1G005920.1	Barley	peroxisome	62.21	44.31
TraesCS6B01G367600.5	Wheat	plastid	67.01	44.2
TraesCS7A01G074100.1	Wheat	mitochondrion	41.57	41.15
GSMUA_AchrUn_...	Banana	cytosol, plastid	53.49	36.08
TraesCS7D01G068900.1	Wheat	cytosol	40.84	35.17
CDX80666	Canola	plastid	45.64	31.34
VIT_16s0039g02130.t01	Wine grape	plastid	48.11	30.91
CDX86171	Canola	cytosol, mitochondrion	45.49	30.75
AT5G27270.1	Thale cress	plastid	45.35	30.06
KRH42711	Soybean	plastid	46.95	29.94
Bra009971.1-P	Field mustard	cytosol, mitochondrion	45.06	29.19
PGSC0003DMT400008145	Potato	plastid	44.33	28.64
Solyc03g097000.2.1	Tomato	plastid	44.19	28.54
EES13584	Sorghum	mitochondrion	18.02	13.16
KXG19540	Sorghum	plastid	15.7	7.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1W0VR10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU75712	ProteinID:OQU75712	ProteinID:OQU75712.1	PFAM:PF01535
PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF321
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G009466	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0009DC90AD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:780383..783170

Molecular Weight (calculated)

77567.9 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.188

Length

688 amino acids

Sequence
(BLAST)

001: MAAAPPHGHT PVGAAAATSA AVSIACSSSA ASCYEDDDDY GGASSSWSLS SPRRRQPYRR LLRDEAQRLR RARRGQGPGA DTPRWVRRTT DQMARYVEDD
101: RAGHVYGRHV VAAVRAVRAT ASRPSADMRL AMASFVTRLT FREMCVVLRE QRGWRQARDF FAWMKLQLCY EPSVVAYTIL LRLYGKVGKI KLAEETFLEM
201: LQVGCEPDAV ACGTLLCMYA RWGRHKDMML FYSAVRRRDL VPPVSVYNYM ISSLQKQKLH GKVIHVWKQM REAGALPNQF TYTVVISSFV KEDLLEKAMD
301: VFGEMRQCRF VPEEATYSLL ISASSRHGKG EQALRLFEEM KAQGIVPSNY TCASLLALYY KNEDYSKALS LLSEMENSKV IPDEVIYGIL IRIYGKLGLY
401: EEAEQTFEKI EKAGLLSDEQ TYVAMAQVHL NAGDYDRALE VLESMMMRNV KPSHFSYSAI LRCYVAKEDI VAAEDTFRAL SQHGLPDVFC CNDLLRLYMR
501: LGHLEKARAL VLKMREDDFR LDEDLSMTVM KFYCKSNMIN DAEKIFKDIQ RNNKTVKIPT MLLLIEMYAR NKSSVILREH SSSKALDGTD SSAASVALKS
601: LLDMPGGLSS VSLLISKLAR EEGANVYNAM VDAFCKCGKT EDAYHLFMEM VDQGSNRDAV TVSILVTHLT KHVSKQVNCI QPSAYMIV

Best Arabidopsis Sequence Match ( AT5G27270.1 )
(BLAST)

0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV

Arabidopsis Description

EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.