Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0111300-00 | Rice | plastid | 32.94 | 56.19 |
| VIT_16s0039g02130.t01 | Wine grape | plastid | 58.33 | 55.56 |
| HORVU0Hr1G005920.1 | Barley | peroxisome | 51.37 | 54.24 |
| Zm00001d045550_P002 | Maize | plastid | 54.8 | 53.49 |
| OQU75712 | Sorghum | plastid | 36.08 | 53.49 |
| TraesCS6A01G337000.4 | Wheat | plastid | 54.71 | 53.35 |
| PGSC0003DMT400008145 | Potato | plastid | 55.49 | 53.15 |
| TraesCS6D01G317500.5 | Wheat | plastid | 54.12 | 52.82 |
| TraesCS6B01G367600.5 | Wheat | plastid | 53.92 | 52.73 |
| Solyc03g097000.2.1 | Tomato | plastid | 54.61 | 52.3 |
| KRH42711 | Soybean | plastid | 54.51 | 51.53 |
| CDX80666 | Canola | plastid | 50.0 | 50.9 |
| CDX86171 | Canola | cytosol, mitochondrion | 49.9 | 50.0 |
| TraesCS7A01G074100.1 | Wheat | mitochondrion | 33.63 | 49.35 |
| AT5G27270.1 | Thale cress | plastid | 50.1 | 49.23 |
| Bra009971.1-P | Field mustard | cytosol, mitochondrion | 49.8 | 47.83 |
| TraesCS7D01G068900.1 | Wheat | cytosol | 37.35 | 47.68 |
| GSMUA_Achr5P04630_001 | Banana | cytosol | 14.51 | 21.8 |
| GSMUA_Achr10P... | Banana | plastid | 17.55 | 12.97 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_AchrUn_randomG07830_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP07830_001 | EnsemblPlants:GSMUA_AchrUn_randomT07830_001 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M0U794 | PFAM:PF01535 |
| PFAM:PF13041 | PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF321 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000296B1D6 |
| SEG:seg | : | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At5g27270 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG07830_001]
Coordinates
chrchrUn_random:-:32703230..32710411
Molecular Weight (calculated)
115415.0 Da
IEP (calculated)
8.146
GRAVY (calculated)
-0.200
Length
1020 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDCLRSPFLS PFTSPPQNPF GLPPPRPRSK LLNSNPPVRS SNASDPWSLS DGNSGRPRPR PYRRNPRKPL SDDDARRIIH AKAQYLSRLR RNQGSGAQTP
0101: RWIRRTPEQM AQLIEDDRDG HLYGKHVVAA IRKVRALGGR PEGSYDMREV MASFVTRLSF REMCVVLKEQ RGWRQVRDFF AWMKLQLCYR PSVIVYTIVL
0201: RIYGQVGKIK LAEQIFLEML EAGCEPDEVA CGTMLCAYAR WGRHKDMMLF YSAVRRRDIL PSVAVFNFMI SSLQKQKLHE KVIQLWKQML DDAVEPNRFT
0301: YTIIISSYAK EDLVDDAFDA FRKMKKSGFT PEEATYSLLI TLSVKHGKGD DALQLYEEMK ALAIIPSNYT LASLLTLHCK NANYSKALAL FTEMERNKIV
0401: PDEVIYGILI RIYGKLGLYE DALKMFEEIE KIGLLNDEKT YVAMANVHLN VGNYEEAVGI IELMRSRNVE LSNFAYNVLL RCYVAKEDVA SAELTFQMLS
0501: KTGLPDAGCC NDLLRLYAKL GLFEKAKVLI SQVRHDEIKL DEGLYKTVLE VYCKKGMIDD AEILMEEMEN VGLAIDKFTK TSLMAMYEIL KSLCQTNGGL
0601: STASQLISKY AREGKPLILD LGFIPEDSVV ASMITLYGRC HQLKQAQEVF ASVSHSSKPA EAAYNSMIGV CCKCGDVDEA IRLYKEMINR AYTQDAVTIS
0701: ILVNTLTKNG KYMEAERIIY DSFNSNMELD TVAYNTYIKS MLEAGKLHSA VSIYDHMISS GVPPSLQTYN TMISVHGQRG KLEKAIEMFN TAQGLGLSID
0801: EKAYTNMISY YGKAGRTEKA SLLFSKMMEV GILPGRISYN TMINVYATSG LHREAEDLFQ DMQRIGHFPD SHTYLALVRA FTESKKYSEA EKTIRRMIGD
0901: GIAPSSAHFN HLIFAFTKEG FIFEAERVIR EMRETGLDPD LACCRTMMRA YMDYGLVEKG LSFFETINKF LKPDGFILSA AAHLYEFAGK ESEAGDILDA
1001: INLNGLLFLR NLRVGSKVQA
0101: RWIRRTPEQM AQLIEDDRDG HLYGKHVVAA IRKVRALGGR PEGSYDMREV MASFVTRLSF REMCVVLKEQ RGWRQVRDFF AWMKLQLCYR PSVIVYTIVL
0201: RIYGQVGKIK LAEQIFLEML EAGCEPDEVA CGTMLCAYAR WGRHKDMMLF YSAVRRRDIL PSVAVFNFMI SSLQKQKLHE KVIQLWKQML DDAVEPNRFT
0301: YTIIISSYAK EDLVDDAFDA FRKMKKSGFT PEEATYSLLI TLSVKHGKGD DALQLYEEMK ALAIIPSNYT LASLLTLHCK NANYSKALAL FTEMERNKIV
0401: PDEVIYGILI RIYGKLGLYE DALKMFEEIE KIGLLNDEKT YVAMANVHLN VGNYEEAVGI IELMRSRNVE LSNFAYNVLL RCYVAKEDVA SAELTFQMLS
0501: KTGLPDAGCC NDLLRLYAKL GLFEKAKVLI SQVRHDEIKL DEGLYKTVLE VYCKKGMIDD AEILMEEMEN VGLAIDKFTK TSLMAMYEIL KSLCQTNGGL
0601: STASQLISKY AREGKPLILD LGFIPEDSVV ASMITLYGRC HQLKQAQEVF ASVSHSSKPA EAAYNSMIGV CCKCGDVDEA IRLYKEMINR AYTQDAVTIS
0701: ILVNTLTKNG KYMEAERIIY DSFNSNMELD TVAYNTYIKS MLEAGKLHSA VSIYDHMISS GVPPSLQTYN TMISVHGQRG KLEKAIEMFN TAQGLGLSID
0801: EKAYTNMISY YGKAGRTEKA SLLFSKMMEV GILPGRISYN TMINVYATSG LHREAEDLFQ DMQRIGHFPD SHTYLALVRA FTESKKYSEA EKTIRRMIGD
0901: GIAPSSAHFN HLIFAFTKEG FIFEAERVIR EMRETGLDPD LACCRTMMRA YMDYGLVEKG LSFFETINKF LKPDGFILSA AAHLYEFAGK ESEAGDILDA
1001: INLNGLLFLR NLRVGSKVQA
0001: MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
0101: TPEQMVQYLE DDRNGQMYGK HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL QLSYRPSVVV YTIVLRLYGQ
0201: VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
0301: SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI
0401: RGLIIRIYGK LGLFHDAQSM FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK IQNVDCAEEA FRALSKTGLP
0501: DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
0601: DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK
0701: TPGKSVIRSM IDAYVRCGWL EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL IKAMLEAGKL QCASEIYERM
0801: HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
0901: LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA
1001: EKGILFYEKM IRSSVEDDRF VSSVVEDLYK AVGKEQDV
Arabidopsis Description
EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.