Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G074100.1 | Wheat | mitochondrion | 65.58 | 75.4 |
| HORVU0Hr1G005920.1 | Barley | peroxisome | 77.6 | 64.18 |
| TraesCS6D01G317500.5 | Wheat | plastid | 80.48 | 61.53 |
| Zm00001d045550_P002 | Maize | plastid | 56.45 | 43.16 |
| OQU75712 | Sorghum | plastid | 35.17 | 40.84 |
| Os06t0111300-00 | Rice | plastid | 28.04 | 37.46 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 47.68 | 37.35 |
| VIT_16s0039g02130.t01 | Wine grape | plastid | 42.93 | 32.03 |
| Solyc03g097000.2.1 | Tomato | plastid | 39.92 | 29.95 |
| CDX80666 | Canola | plastid | 37.42 | 29.84 |
| PGSC0003DMT400008145 | Potato | plastid | 39.67 | 29.77 |
| KRH42711 | Soybean | plastid | 39.17 | 29.01 |
| CDX86171 | Canola | cytosol, mitochondrion | 36.92 | 28.98 |
| AT5G27270.1 | Thale cress | plastid | 37.05 | 28.52 |
| Bra009971.1-P | Field mustard | cytosol, mitochondrion | 36.8 | 27.68 |
| TraesCS5D01G229900.1 | Wheat | plastid | 14.77 | 12.72 |
| TraesCS7D01G162800.1 | Wheat | plastid | 17.15 | 9.46 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G068900.1 | EnsemblPlantsGene:TraesCS7D01G068900 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:PPR_long | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF321 | PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFAM:PF17177 | PFscan:PS51375 |
| SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:39705341..39713406
Molecular Weight (calculated)
89731.8 Da
IEP (calculated)
6.565
GRAVY (calculated)
-0.076
Length
799 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVHTPGEAW RHDALLHRDA QAWVAPPVSA FNFMLSSLQK NRLHGKVIHL WKHMVEMEEA NNVVPNHFTY TVVIGSFVKE GLLEEAMDVL GKMSADLIHN
101: MQTHILITSR FVTEESTYSG LISLSARHRR MEQAVGLYEE MRAHGIVPSN DTCASLLALY DKSEDYSKAL SRFSEMERSR VVIDGVIYGI LIRIYGKIWL
201: YDDAQRTFEE IDNMCFLSVE QTYVAMAQVH MNAGNYGKAL QVFGLMRSRN VKPLPFSYGA LLRCHVARED IAAAEDAFRA LCKYGLPDVF CCNDLLRLYV
301: KLGQLEKASA FIRKMRKEDI LLDEALCMTV MKVSCKSGMI ADVDKILKEM ENEGVTMKNS TIVSMIEMYA RSRTSVMQEQ DSSSKALGCQ TDHSTLDTTF
401: RSLLHTPLGS SIACQLIRKF SREGSTCEAK FLHEQLTELV VEPEDSATAT LMVQYGQEQK LQQAVELFES ASTLFPVGGP VYNAMVDALC KCGKIEEAYH
501: LIMKMADQGQ SKDVVTISIL VNHLTKHEHH TCSFNGEVEL DTVVYNTFIK SMLYIYDRLI SSGVPRSLQT FNIMISVYGL GGKLDKAAEM FTSAQELGLP
601: IEEKIYTNML NFYGKAGRHQ DASLLFNRMK ELGIMPGKTS FNSMINAYAT SRLHDKAEIV FQEMKSQGQV AIQMMLSSGI TPSCPHFSHL IFAFLKEGQI
701: DEAQRICCQM QEIGVAVDLA CCRAMMRAYL EHGRVDEGIS LFETIRRSLK PNGFILSATF QLYVHSGREP EAGDVLEAIG LHGASFLRSL KVESKLEST
101: MQTHILITSR FVTEESTYSG LISLSARHRR MEQAVGLYEE MRAHGIVPSN DTCASLLALY DKSEDYSKAL SRFSEMERSR VVIDGVIYGI LIRIYGKIWL
201: YDDAQRTFEE IDNMCFLSVE QTYVAMAQVH MNAGNYGKAL QVFGLMRSRN VKPLPFSYGA LLRCHVARED IAAAEDAFRA LCKYGLPDVF CCNDLLRLYV
301: KLGQLEKASA FIRKMRKEDI LLDEALCMTV MKVSCKSGMI ADVDKILKEM ENEGVTMKNS TIVSMIEMYA RSRTSVMQEQ DSSSKALGCQ TDHSTLDTTF
401: RSLLHTPLGS SIACQLIRKF SREGSTCEAK FLHEQLTELV VEPEDSATAT LMVQYGQEQK LQQAVELFES ASTLFPVGGP VYNAMVDALC KCGKIEEAYH
501: LIMKMADQGQ SKDVVTISIL VNHLTKHEHH TCSFNGEVEL DTVVYNTFIK SMLYIYDRLI SSGVPRSLQT FNIMISVYGL GGKLDKAAEM FTSAQELGLP
601: IEEKIYTNML NFYGKAGRHQ DASLLFNRMK ELGIMPGKTS FNSMINAYAT SRLHDKAEIV FQEMKSQGQV AIQMMLSSGI TPSCPHFSHL IFAFLKEGQI
701: DEAQRICCQM QEIGVAVDLA CCRAMMRAYL EHGRVDEGIS LFETIRRSLK PNGFILSATF QLYVHSGREP EAGDVLEAIG LHGASFLRSL KVESKLEST
001: MAEETFLEML EVGCEPDAVA CGTMLCTYAR WGRHSAMLTF YKAVQERRIL LSTSVYNFML SSLQKKSFHG KVIDLWLEMV EEGVPPNEFT YTLVVSSYAK
101: QGFKEEALKA FGEMKSLGFV PEEVTYSSVI SLSVKAGDWE KAIGLYEDMR SQGIVPSNYT CATMLSLYYK TENYPKALSL FADMERNKIP ADEVIRGLII
201: RIYGKLGLFH DAQSMFEETE RLNLLADEKT YLAMSQVHLN SGNVVKALDV IEMMKTRDIP LSRFAYIVML QCYAKIQNVD CAEEAFRALS KTGLPDASSC
301: NDMLNLYTRL NLGEKAKGFI KQIMVDQVHF DIELYKTAMR VYCKEGMVAE AQDLIVKMGR EARVKDNRFV QTLAESMHIV NKHDKHEAVL NVSQLDVMAL
401: GLMLNLRLKE GNLNETKAIL NLMFKTDLGS SAVNRVISSF VREGDVSKAE MIADIIIRLG LRMEEETIAT LIAVYGRQHK LKEAKRLYLA AGESKTPGKS
501: VIRSMIDAYV RCGWLEDAYG LFMESAEKGC DPGAVTISIL VNALTNRGKH REAEHISRTC LEKNIELDTV GYNTLIKAML EAGKLQCASE IYERMHTSGV
601: PCSIQTYNTM ISVYGRGLQL DKAIEIFSNA RRSGLYLDEK IYTNMIMHYG KGGKMSEALS LFSEMQKKGI KPGTPSYNMM VKICATSRLH HEVDELLQAM
701: ERNGRCTDLS TYLTLIQVYA ESSQFAEAEK TITLVKEKGI PLSHSHFSSL LSALVKAGMM EEAERTYCKM SEAGISPDSA CKRTILKGYM TCGDAEKGIL
801: FYEKMIRSSV EDDRFVSSVV EDLYKAVGKE QDV
101: QGFKEEALKA FGEMKSLGFV PEEVTYSSVI SLSVKAGDWE KAIGLYEDMR SQGIVPSNYT CATMLSLYYK TENYPKALSL FADMERNKIP ADEVIRGLII
201: RIYGKLGLFH DAQSMFEETE RLNLLADEKT YLAMSQVHLN SGNVVKALDV IEMMKTRDIP LSRFAYIVML QCYAKIQNVD CAEEAFRALS KTGLPDASSC
301: NDMLNLYTRL NLGEKAKGFI KQIMVDQVHF DIELYKTAMR VYCKEGMVAE AQDLIVKMGR EARVKDNRFV QTLAESMHIV NKHDKHEAVL NVSQLDVMAL
401: GLMLNLRLKE GNLNETKAIL NLMFKTDLGS SAVNRVISSF VREGDVSKAE MIADIIIRLG LRMEEETIAT LIAVYGRQHK LKEAKRLYLA AGESKTPGKS
501: VIRSMIDAYV RCGWLEDAYG LFMESAEKGC DPGAVTISIL VNALTNRGKH REAEHISRTC LEKNIELDTV GYNTLIKAML EAGKLQCASE IYERMHTSGV
601: PCSIQTYNTM ISVYGRGLQL DKAIEIFSNA RRSGLYLDEK IYTNMIMHYG KGGKMSEALS LFSEMQKKGI KPGTPSYNMM VKICATSRLH HEVDELLQAM
701: ERNGRCTDLS TYLTLIQVYA ESSQFAEAEK TITLVKEKGI PLSHSHFSSL LSALVKAGMM EEAERTYCKM SEAGISPDSA CKRTILKGYM TCGDAEKGIL
801: FYEKMIRSSV EDDRFVSSVV EDLYKAVGKE QDV
Arabidopsis Description
EMB976Pentatricopeptide repeat-containing protein At5g27270 [Source:UniProtKB/Swiss-Prot;Acc:O04647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.